Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 3696.7 1876 100.0
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 3575.4 1896 96.5
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 3523.0 1877 95.7
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 3519.2 1856 96.0
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 3498.0 1895 94.3
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 3258.0 1859 89.0
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 3180.2 1859 86.6
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 3155.2 1862 85.9
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 3149.0 1862 85.7
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 3103.2 1828 87.2
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2722.2 1824 76.4
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2715.3 1843 75.6
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2598.9 1887 71.6
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2087.0 1898 58.9
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2072.7 1939 58.5
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2070.8 1887 59.1
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2067.4 1918 58.7
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2065.8 1917 58.2
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2065.0 1959 57.8
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2060.0 1950 57.4
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2055.0 1904 59.1
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2050.0 1952 57.0
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2046.9 1933 57.8
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2046.2 1933 57.4
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2041.5 1908 58.3
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2030.4 1942 57.4
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2021.5 1914 57.0
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2020.4 1886 57.8
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2019.6 1915 57.7
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2011.5 1941 57.2
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2003.8 1912 57.4
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 1988.4 1885 56.7
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1984.9 1925 55.8
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 1981.1 1992 55.3
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1978.4 1901 57.9
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1974.1 1915 56.1
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1972.2 1903 56.6
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1968.7 1924 55.7
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1966.8 1924 55.6
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1963.3 1913 55.9
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1957.6 1925 55.5
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1957.2 1918 55.9
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1949.9 1919 55.9
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1942.9 1915 55.6
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 1939.5 1975 54.3
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1937.2 1893 55.8
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1936.0 1857 57.5
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1931.8 1914 55.6
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1920.2 1901 55.5
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 1917.5 1912 55.4
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 1916.0 1901 55.0
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1905.2 1920 54.9
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 1897.1 1944 53.4
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1896.3 1922 55.2
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1890.2 1931 53.0
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1885.5 1987 52.6
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1881.3 2045 52.0
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 1868.6 1904 53.6
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1859.3 1882 53.1
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1859.3 1770 58.1
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1854.7 1900 53.1
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 1854.3 1929 52.2
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1853.2 1930 52.6
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1849.7 1951 52.8
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1831.6 1919 52.0
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1822.8 1951 52.5
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1813.9 1872 52.6
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1812.0 1891 53.4
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1805.4 2029 50.3
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1799.3 1864 53.4
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1783.1 1865 53.2
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1769.6 1849 52.8
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1767.3 1931 51.9
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1766.5 1854 53.1
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1746.1 1930 50.5
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1741.9 1767 54.2
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1725.7 1911 50.5
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1721.8 1896 50.4
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1708.7 1914 50.3
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1662.5 1909 49.9
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1651.7 2115 46.8
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1560.0 1910 47.9
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1545.8 1578 54.8
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1459.1 1534 52.3
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1373.6 1882 43.9
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1372.8 1721 47.4
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1290.0 1354 53.8
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 0.0e+00 1258.4 710 89.4
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1210.3 2120 38.0
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1175.6 1052 59.5
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1161.7 2156 36.5
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1156.4 1895 38.8
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 8.0e-304 1048.1 2089 34.8
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 4.3e-257 892.9 679 66.4
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 1.0e-226 792.0 785 55.2
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 1.3e-221 775.0 1139 41.5
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.0e-218 765.4 2068 30.2
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 1.5e-206 724.9 1343 37.8
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.3e-202 711.1 685 55.9
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 3.8e-189 667.2 742 50.9
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 2.0e-177 628.2 691 50.9
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 7.0e-151 540.0 790 44.1
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 1.5e-108 399.4 358 56.1
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 8.1e-107 393.7 401 51.6
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 1.7e-88 332.8 224 75.4
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 8.5e-72 277.3 187 71.1
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 5.2e-69 268.1 224 62.5
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 4.5e-65 255.0 476 38.9
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.1e-55 223.8 271 46.5
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 1.5e-55 223.4 281 46.3
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.0e-53 217.2 271 44.3
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.3e-53 216.1 218 53.7
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 1.7e-48 199.9 124 75.8
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 1.4e-34 153.7 240 43.3
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 2.6e-28 132.9 164 47.0
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 9.2e-26 124.4 86 70.9
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.3e-24 120.6 125 50.4
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 3.1e-21 109.4 475 25.3
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 9.2e-18 97.8 140 39.3
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 4.6e-17 95.5 69 63.8
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 4.3e-15 89.0 78 61.5
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 2.9e-11 76.3 58 62.1
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 4.9e-11 75.5 61 54.1
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 1.0e-08 67.8 300 28.0
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.7e-08 67.0 74 48.6
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 3.0e-08 66.2 64 45.3
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 3.6e-06 59.3 82 39.0


User provided reference genes

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