Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 2.8e-99 365.2 168 100.0
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 2.4e-98 362.1 168 99.4
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 2.4e-98 362.1 168 99.4
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 6.8e-98 360.5 168 98.8
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 3.4e-97 358.2 168 98.2
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 3.4e-97 358.2 168 98.2
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 4.4e-97 357.8 168 98.2
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.4e-95 352.8 168 96.4
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 7.1e-95 350.5 168 95.8
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 9.3e-95 350.1 178 92.7
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 9.3e-95 350.1 168 95.2
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 9.3e-95 350.1 168 95.8
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 4.6e-94 347.8 168 95.2
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.6e-89 332.0 168 90.5
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.9e-88 328.6 168 91.1
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 8.1e-75 283.9 136 94.9
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 5.8e-73 277.7 126 98.4
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 5.5e-71 271.2 168 75.6
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 4.6e-70 268.1 168 72.0
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 1.0e-69 266.9 168 71.4
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 71.3
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 1.8e-69 266.2 168 72.0
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 3.9e-69 265.0 168 70.8
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 5.1e-69 264.6 168 70.8
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 6.7e-69 264.2 168 71.4
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 6.7e-69 264.2 168 70.8
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 1.1e-68 263.5 168 69.6
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.5e-68 263.1 168 70.2
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 3.3e-68 261.9 168 71.4
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 4.3e-68 261.5 168 71.4
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 5.7e-68 261.2 168 70.8
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 9.6e-68 260.4 168 70.8
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 1.3e-67 260.0 168 70.8
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 1.6e-67 259.6 168 71.4
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 2.1e-67 259.2 168 69.6
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 2.1e-67 259.2 168 69.0
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 2.8e-67 258.8 168 70.2
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.7e-67 258.5 168 70.8
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 8.2e-67 257.3 168 70.8
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 8.2e-67 257.3 168 70.8
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 8.2e-67 257.3 168 70.8
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 1.1e-66 256.9 168 69.6
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 1.1e-66 256.9 168 69.6
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 1.1e-66 256.9 168 68.5
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.4e-66 256.5 165 70.3
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 1.8e-66 256.1 168 68.5
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 2.4e-66 255.8 168 69.6
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 4.1e-66 255.0 168 68.5
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 5.3e-66 254.6 168 69.6
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 6.9e-66 254.2 165 69.7
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 1.2e-65 253.4 168 70.2
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 2.6e-65 252.3 168 67.9
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 4.5e-65 251.5 168 69.0
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 4.5e-65 251.5 168 69.0
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 5.9e-65 251.1 168 67.9
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 5.9e-65 251.1 168 67.3
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 7.6e-65 250.8 175 68.0
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 1.7e-64 249.6 168 67.9
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 6.5e-64 247.7 168 68.5
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 6.5e-64 247.7 168 68.5
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 6.5e-64 247.7 167 67.7
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 8.4e-64 247.3 165 69.7
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.4e-63 246.5 168 67.9
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 1.9e-63 246.1 167 67.1
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 3.2e-63 245.4 168 67.9
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 4.2e-63 245.0 168 66.7
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 5.5e-63 244.6 168 66.1
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 9.3e-63 243.8 168 67.3
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 9.3e-63 243.8 165 64.8
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 1.2e-62 243.4 167 65.3
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 2.1e-62 242.7 165 68.5
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 4.6e-62 241.5 168 67.3
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 7.9e-62 240.7 168 64.9
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 1.0e-61 240.4 168 63.7
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.0e-61 240.4 168 64.9
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.3e-61 240.0 167 63.5
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.3e-61 240.0 168 64.3
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.8e-61 239.6 168 65.5
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.3e-61 239.2 167 64.1
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 3.0e-61 238.8 167 63.5
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 8.7e-61 237.3 168 65.5
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 8.7e-61 237.3 168 65.5
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 1.1e-60 236.9 168 63.7
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 2.5e-60 235.7 168 66.7
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 3.3e-60 235.3 168 63.7
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 4.3e-60 235.0 168 63.1
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 7.4e-60 234.2 168 66.1
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 9.7e-60 233.8 168 64.3
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 1.3e-59 233.4 168 67.3
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 8.2e-59 230.7 190 59.5
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 8.2e-59 230.7 168 63.7
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 8.2e-59 230.7 165 64.2
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 3.1e-58 228.8 165 65.5
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 3.1e-58 228.8 220 51.4
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 5.3e-58 228.0 160 63.1
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.3e-58 228.0 180 58.9
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 9.0e-58 227.3 190 58.4
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 2.0e-57 226.1 168 60.7
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.0e-56 223.8 168 63.1
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 3.8e-56 221.9 168 61.9
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 1.9e-55 219.5 168 58.9
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 5.5e-55 218.0 167 61.1
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 1.6e-54 216.5 165 61.8
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 2.7e-54 215.7 204 52.5
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 7.9e-54 214.2 190 54.2
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 5.7e-52 208.0 167 59.3
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.8e-50 203.0 131 67.2
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.0e-49 199.5 126 69.0
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 3.4e-49 198.7 138 65.9
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 7.7e-49 197.6 176 52.8
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 6.5e-48 194.5 167 56.3
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 1.1e-47 193.7 183 57.9
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 9.4e-47 190.7 179 49.7
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 1.4e-45 186.8 168 52.4
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 4.4e-44 181.8 168 52.4
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.7e-43 179.9 127 63.8
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 1.8e-42 176.4 165 53.3
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.2e-41 173.7 168 51.8
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 5.9e-41 171.4 116 65.5
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 3.2e-39 165.6 166 49.4
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 6.1e-38 161.4 179 46.4
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 8.0e-38 161.0 168 49.4
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.8e-37 159.8 165 50.3
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 2.3e-37 159.5 165 50.3
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.1e-36 157.1 135 54.1
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.5e-36 156.8 134 54.5
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 2.6e-36 156.0 169 46.7
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 7.5e-36 154.5 99 72.7
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.3e-35 153.7 151 52.3
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.7e-35 153.3 147 52.4
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.1e-34 150.6 117 59.8
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 1.1e-34 150.6 131 58.8
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.4e-34 149.4 131 53.4
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 8.5e-32 141.0 98 63.3
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 8.5e-32 141.0 98 63.3
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 3.2e-31 139.0 128 50.0
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 1.3e-27 127.1 98 60.2
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.5e-23 113.6 165 37.6
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.6e-22 110.2 165 36.4
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.7e-22 109.4 78 61.5
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 1.4e-21 107.1 98 58.2
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 1.8e-21 106.7 111 50.5
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 8.8e-21 104.4 127 40.2
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.7e-19 100.1 95 51.6
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 4.5e-17 92.0 75 60.0
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 1.1e-15 87.4 42 100.0
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 7.3e-15 84.7 41 97.6
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 2.8e-14 82.8 170 32.4
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.0e-13 79.3 60 58.3
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.5e-12 77.0 117 32.5
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.4e-12 75.9 65 53.8
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.4e-12 75.9 65 53.8
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 3.4e-12 75.9 104 37.5
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.7e-12 75.1 60 56.7
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.7e-12 75.1 68 51.5
COL.COLO4_30599 Corchorus olitorius HOM05D004267 ORTHO05D044750 3.2e-10 69.3 170 31.2
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.1e-10 68.9 65 50.8
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 5.4e-10 68.6 45 64.4
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.2e-10 67.8 65 49.2
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 1.5e-07 60.5 86 36.0
AUR62000987 Chenopodium quinoa HOM05D001081 ORTHO05D004708 2.1e-06 56.6 34 64.7
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 4.7e-06 55.5 40 62.5


User provided reference genes

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