Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p05550 Brassica napus HOM05D011012 ORTHO05D011368 4.0e-117 424.9 226 100.0
BcaC09g52116 Brassica carinata HOM05D011012 ORTHO05D011368 5.7e-116 421.0 226 99.1
A01p05080 Brassica napus HOM05D011012 ORTHO05D011368 5.7e-116 421.0 226 99.1
BolC1t00535H Brassica oleracea HOM05D011012 ORTHO05D011368 6.3e-115 417.5 228 98.7
BraA01t00490Z Brassica rapa HOM05D011012 ORTHO05D011368 1.8e-114 416.0 228 98.2
Thhalv10027222m.g Eutrema salsugineum HOM05D011012 ORTHO05D011368 3.3e-103 378.6 226 89.4
AL7G18440 Arabidopsis lyrata HOM05D011012 ORTHO05D011368 3.4e-100 368.6 226 86.3
Carub.0007s0733 Capsella rubella HOM05D011012 ORTHO05D011368 2.2e-99 365.9 228 86.0
Sp7g30870 Schrenkiella parvula HOM05D011012 ORTHO05D011368 6.6e-96 354.4 214 89.3
CARHR241150 Cardamine hirsuta HOM05D011012 ORTHO05D011368 1.9e-95 352.8 227 84.6
AT4G33130 Arabidopsis thaliana HOM05D011012 ORTHO05D011368 1.1e-63 247.3 150 86.0
THA.LOC104803715 Tarenaya hassleriana HOM05D011012 ORTHO05D011368 7.4e-63 244.6 218 67.4
Atru.chr7.1800 Acer truncatum HOM05D000370 ORTHO05D006313 5.7e-39 165.2 194 55.7
Potri.006G216800 Populus trichocarpa HOM05D000370 ORTHO05D006313 8.2e-38 161.4 204 50.0
Sabra06G0167200 Salix brachista HOM05D000370 ORTHO05D006313 3.1e-37 159.5 232 46.6
Thecc.09G067700 Theobroma cacao HOM05D000370 ORTHO05D006313 4.5e-36 155.6 232 48.7
Duzib168G0938 Durio zibethinus HOM05D000370 ORTHO05D006313 1.0e-35 154.5 201 51.7
Manes.03G054600 Manihot esculenta HOM05D000370 ORTHO05D006313 1.3e-35 154.1 144 59.7
Duzib187G1680 Durio zibethinus HOM05D000370 ORTHO05D006313 4.7e-33 145.6 227 47.1
Gorai.001G018600 Gossypium raimondii HOM05D000370 ORTHO05D006313 1.5e-31 140.6 211 46.4
GSVIVG01014994001 Vitis vinifera HOM05D000370 ORTHO05D006313 1.3e-30 137.5 181 51.9
Gohir.A05G037200 Gossypium hirsutum HOM05D000370 ORTHO05D006313 1.7e-30 137.1 185 49.7
Gohir.D05G038700 Gossypium hirsutum HOM05D000370 ORTHO05D006313 2.2e-30 136.7 185 49.7
Gorai.009G039200 Gossypium raimondii HOM05D000370 ORTHO05D006313 2.2e-30 136.7 185 50.3
Gohir.D07G017900 Gossypium hirsutum HOM05D000370 ORTHO05D006313 1.3e-27 127.5 227 42.7
BcaC09g52117 Brassica carinata HOM05D011012 ORTHO05D011368 2.9e-27 126.3 73 90.4
Ciclev10010792m.g Citrus clementina HOM05D011012 ORTHO05D011368 5.5e-26 122.1 227 44.5
Eucgr.C00757 Eucalyptus grandis HOM05D000370 ORTHO05D006313 6.1e-25 118.6 184 40.8
Gohir.A07G018100 Gossypium hirsutum HOM05D000370 ORTHO05D006313 6.1e-25 118.6 172 47.7
MBI13_g09077_MAGBIO Magnolia biondii HOM05D000370 ORTHO05D006313 8.0e-25 118.2 181 46.4
COL.COLO4_21180 Corchorus olitorius HOM05D000370 ORTHO05D006313 3.1e-21 106.3 79 75.9
SHI27952 Sapria himalayana HOM05D000370 ORTHO05D006313 6.5e-19 98.6 118 52.5
Sabra15G0073500 Salix brachista HOM05D011012 ORTHO05D011368 1.0e-16 91.3 79 62.0
FAN02G0132 Fragaria x ananassa HOM05D000370 ORTHO05D006313 3.0e-16 89.7 112 50.9
FAN02G1594 Fragaria x ananassa HOM05D000370 ORTHO05D006313 3.0e-16 89.7 112 50.9
Nn8g41277 Nelumbo nucifera HOM05D000370 ORTHO05D006313 5.2e-16 89.0 87 57.5
FAN05G4541 Fragaria x ananassa HOM05D000370 ORTHO05D006313 6.8e-16 88.6 112 49.1
QL05p089080 Quercus lobata HOM05D000370 ORTHO05D006313 6.8e-16 88.6 127 46.5
FAN14G2100 Fragaria x ananassa HOM05D000370 ORTHO05D006313 1.2e-15 87.8 134 44.0
QL08p018247 Quercus lobata HOM05D000370 ORTHO05D006313 1.2e-15 87.8 120 46.7
FvH4_6g36420 Fragaria vesca HOM05D000370 ORTHO05D006313 1.5e-15 87.4 134 44.0
Thecc.06G050400 Theobroma cacao HOM05D000370 ORTHO05D006313 1.5e-15 87.4 151 41.1
Gohir.A05G116100 Gossypium hirsutum HOM05D000370 ORTHO05D006313 2.6e-15 86.7 87 57.5
Gohir.D05G117000 Gossypium hirsutum HOM05D000370 ORTHO05D006313 2.6e-15 86.7 87 57.5
Gorai.009G121000 Gossypium raimondii HOM05D000370 ORTHO05D006313 2.6e-15 86.7 87 57.5
TWI12G1236 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 2.6e-15 86.7 104 51.0
HPP92_027162 Vanilla planifolia HOM05D000370 ORTHO05D006313 2.6e-15 86.7 213 32.9
QL03p048724 Quercus lobata HOM05D000370 ORTHO05D011368 3.4e-15 86.3 127 45.7
RcHm_v2.0_Chr2g0148391 Rosa chinensis HOM05D000370 ORTHO05D006313 3.4e-15 86.3 123 44.7
FAN09G0130 Fragaria x ananassa HOM05D000370 ORTHO05D006313 4.4e-15 85.9 134 44.0
GSVIVG01029452001 Vitis vinifera HOM05D000370 ORTHO05D006313 5.7e-15 85.5 97 50.5
CiPaw.02G129400 Carya illinoinensis HOM05D000370 ORTHO05D006313 7.5e-15 85.1 108 48.1
CANSAT01G2135 Cannabis sativa HOM05D000370 ORTHO05D006313 1.3e-14 84.3 132 41.7
CiPaw.01G209200 Carya illinoinensis HOM05D000370 ORTHO05D006313 1.3e-14 84.3 84 56.0
Duzib192G0552 Durio zibethinus HOM05D000370 ORTHO05D006313 1.3e-14 84.3 114 46.5
SEGI_40993 Sequoiadendron giganteum HOM05D000370 ORTHO05D006313 1.3e-14 84.3 94 50.0
MD17G1157700 Malus domestica HOM05D000370 ORTHO05D006313 2.2e-14 83.6 112 43.8
Atru.chr3.4086 Acer truncatum HOM05D000370 ORTHO05D006313 2.8e-14 83.2 174 39.7
Gorai.010G042700 Gossypium raimondii HOM05D013611 ORTHO05D011368 2.8e-14 83.2 119 47.1
BraA05t22451Z Brassica rapa HOM05D000370 ORTHO05D006313 8.3e-14 81.6 109 44.0
Gohir.D05G357412 Gossypium hirsutum HOM05D013611 ORTHO05D011368 1.1e-13 81.3 62 69.4
TAR626G1046 Trochodendron aralioides HOM05D000370 ORTHO05D006313 1.8e-13 80.5 110 44.5
Gohir.D04G074332 Gossypium hirsutum HOM05D013611 ORTHO05D011368 2.4e-13 80.1 119 46.2
Potri.007G003900 Populus trichocarpa HOM05D000370 ORTHO05D006313 2.4e-13 80.1 100 48.0
Zm00001eb232490 Zea mays HOM05D000370 ORTHO05D006313 2.4e-13 80.1 87 51.7
BcaC05g29218 Brassica carinata HOM05D000370 ORTHO05D006313 3.1e-13 79.7 110 42.7
C05p54900 Brassica napus HOM05D000370 ORTHO05D006313 3.1e-13 79.7 110 42.7
BolC5t34160H Brassica oleracea HOM05D000370 ORTHO05D006313 3.1e-13 79.7 110 42.7
Sed0024696 Sechium edule HOM05D000370 ORTHO05D006313 4.1e-13 79.3 104 48.1
C03p46040 Brassica napus HOM05D000370 ORTHO05D006313 5.4e-13 79.0 100 44.0
BolC3t16876H Brassica oleracea HOM05D000370 ORTHO05D006313 5.4e-13 79.0 100 44.0
THA.LOC104822748 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 5.4e-13 79.0 100 49.0
Eucgr.F04059 Eucalyptus grandis HOM05D000370 ORTHO05D006313 7.0e-13 78.6 118 44.9
Gohir.D03G111800 Gossypium hirsutum HOM05D013611 ORTHO05D011368 7.0e-13 78.6 62 67.7
Sabra07G0002900 Salix brachista HOM05D000370 ORTHO05D006313 7.0e-13 78.6 100 48.0
Gorai.009G416800 Gossypium raimondii HOM05D013611 ORTHO05D011368 9.1e-13 78.2 118 45.8
MD09G1169500 Malus domestica HOM05D000370 ORTHO05D006313 9.1e-13 78.2 103 46.6
PGR102G3330 Punica granatum HOM05D000370 ORTHO05D006313 9.1e-13 78.2 87 51.7
Aa31LG8G240 Aethionema arabicum HOM05D000370 ORTHO05D006313 1.2e-12 77.8 100 49.0
Os06g0692800 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 1.2e-12 77.8 158 38.0
Actinidia38821 Actinidia chinensis HOM05D000370 ORTHO05D006313 1.6e-12 77.4 102 47.1
ATR0626G124 Amborella trichopoda HOM05D000370 ORTHO05D006313 2.0e-12 77.0 131 41.2
A05p36500 Brassica napus HOM05D000370 ORTHO05D006313 2.0e-12 77.0 130 40.8
PSO170G0708 Papaver somniferum HOM05D000370 ORTHO05D006313 2.0e-12 77.0 97 46.4
Zm00001eb225950 Zea mays HOM05D000370 ORTHO05D006313 2.0e-12 77.0 101 44.6
BcaB06g25494 Brassica carinata HOM05D000370 ORTHO05D006313 2.7e-12 76.6 133 38.3
Dinv20314 Davidia involucrata HOM05D000370 ORTHO05D006313 2.7e-12 76.6 189 33.3
Prupe.3G027500 Prunus persica HOM05D000370 ORTHO05D006313 2.7e-12 76.6 109 44.0
PSO063G1283 Papaver somniferum HOM05D000370 ORTHO05D006313 3.5e-12 76.3 97 45.4
Sp3g11160 Schrenkiella parvula HOM05D000370 ORTHO05D006313 3.5e-12 76.3 111 43.2
BraA03t12947Z Brassica rapa HOM05D000370 ORTHO05D006313 4.5e-12 75.9 120 42.5
Duzib235G0455 Durio zibethinus HOM05D000370 ORTHO05D006313 4.5e-12 75.9 85 51.8
BcaB03g13033 Brassica carinata HOM05D000370 ORTHO05D006313 5.9e-12 75.5 161 36.6
CARHR017210 Cardamine hirsuta HOM05D000370 ORTHO05D006313 5.9e-12 75.5 121 39.7
EL10Ac7g18106 Beta vulgaris HOM05D000370 ORTHO05D006313 7.7e-12 75.1 118 43.2
MELO3C019563.2 Cucumis melo HOM05D000370 ORTHO05D006313 7.7e-12 75.1 87 51.7
A03p37930 Brassica napus HOM05D000370 ORTHO05D006313 1.0e-11 74.7 101 43.6
Sed0025802 Sechium edule HOM05D000370 ORTHO05D006313 1.0e-11 74.7 87 50.6
Zm00001eb273360 Zea mays HOM05D000370 ORTHO05D006313 1.0e-11 74.7 87 46.0
CsaV3_3G018040 Cucumis sativus L. HOM05D000370 ORTHO05D006313 1.3e-11 74.3 87 51.7
Thhalv10007325m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 1.3e-11 74.3 118 41.5
Ah.08g218000 Amaranthus hybridus HOM05D000370 ORTHO05D006313 1.7e-11 73.9 109 44.0
Thhalv10020358m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 1.7e-11 73.9 132 37.1
AUR62001306 Chenopodium quinoa HOM05D000370 ORTHO05D006313 2.2e-11 73.6 110 42.7
ATR0006G027 Amborella trichopoda HOM05D011012 ORTHO05D011368 2.9e-11 73.2 80 52.5
AT1G16750 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 2.9e-11 73.2 87 48.3
A08p31290 Brassica napus HOM05D000370 ORTHO05D006313 2.9e-11 73.2 138 38.4
BraA08t35052Z Brassica rapa HOM05D000370 ORTHO05D006313 2.9e-11 73.2 138 38.4
Hund18552 Selenicereus undatus HOM05D000370 ORTHO05D006313 3.8e-11 72.8 123 42.3
CSS0048464 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 6.5e-11 72.0 87 47.1
AUR62025688 Chenopodium quinoa HOM05D000370 ORTHO05D006313 6.5e-11 72.0 110 41.8
Manes.14G000500 Manihot esculenta HOM05D000370 ORTHO05D006313 6.5e-11 72.0 117 41.0
AL3G24720 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 8.5e-11 71.6 131 37.4
BcaC07g38812 Brassica carinata HOM05D000370 ORTHO05D006313 8.5e-11 71.6 118 40.7
Sp1g14900 Schrenkiella parvula HOM05D000370 ORTHO05D006313 8.5e-11 71.6 118 40.7
C08p17540 Brassica napus HOM05D000370 ORTHO05D006313 1.1e-10 71.2 118 40.7
BolC8t49380H Brassica oleracea HOM05D000370 ORTHO05D006313 1.1e-10 71.2 118 40.7
CARHR087550 Cardamine hirsuta HOM05D000370 ORTHO05D006313 1.5e-10 70.9 111 42.3
Os06g0704100 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 1.9e-10 70.5 91 47.3
Carub.0003s1234 Capsella rubella HOM05D000370 ORTHO05D006313 2.5e-10 70.1 154 35.7
AL1G28920 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 4.2e-10 69.3 87 47.1
AT3G13000 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 4.2e-10 69.3 121 38.0
Carub.0001s1649 Capsella rubella HOM05D000370 ORTHO05D006313 4.2e-10 69.3 87 46.0
Aa31LG7G1210 Aethionema arabicum HOM05D000370 ORTHO05D006313 5.5e-10 68.9 133 38.3
TWI18G0896 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 9.4e-10 68.2 132 37.9
Thhalv10026856m.g Eutrema salsugineum HOM05D011012 ORTHO05D011368 1.2e-09 67.8 70 52.9
Aqoxy7G02562 Aquilegia oxysepala HOM05D000370 ORTHO05D006313 1.6e-09 67.4 147 32.7
Gohir.D06G087000 Gossypium hirsutum HOM05D013611 ORTHO05D011368 2.1e-09 67.0 100 45.0
Cpa.g.sc82.38 Carica papaya HOM05D000370 ORTHO05D006313 2.7e-09 66.6 106 41.5
ClCG05G010450 Citrullus lanatus HOM05D000370 ORTHO05D006313 3.6e-09 66.2 84 50.0
Zm00001eb227220 Zea mays HOM05D000370 ORTHO05D006313 1.0e-08 64.7 86 44.2
CDE04G3500 Ceratophyllum demersum HOM05D000370 ORTHO05D006313 1.4e-08 64.3 96 40.6
CSS0030510 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 2.3e-08 63.5 80 46.2
HPP92_010810 Vanilla planifolia HOM05D000370 ORTHO05D006313 4.0e-08 62.8 119 36.1
Gohir.D01G091100 Gossypium hirsutum HOM05D013611 ORTHO05D011368 5.2e-08 62.4 116 40.5
THA.LOC104812341 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 6.8e-08 62.0 114 35.1
COL.COLO4_26817 Corchorus olitorius HOM05D000370 ORTHO05D006313 2.6e-07 60.1 59 59.3
Pp3c13_8290 Physcomitrium patens HOM05D000370 ORTHO05D006313 7.5e-07 58.5 96 39.6
Pp3c3_3580 Physcomitrium patens HOM05D000370 ORTHO05D006313 1.3e-06 57.8 98 35.7
MBI16_g27941_MAGBIO Magnolia biondii HOM05D011012 ORTHO05D011368 2.2e-06 57.0 62 50.0
CARHR151380 Cardamine hirsuta HOM05D000370 ORTHO05D011368 2.8e-06 56.6 80 46.2
Haze_16167 Corylus avellana HOM05D000370 ORTHO05D006313 3.7e-06 56.2 115 38.3
Rhsim08G0252100 Rhododendron simsii HOM05D000370 ORTHO05D006313 4.9e-06 55.8 74 41.9


User provided reference genes

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