Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 7.6e-127 457.2 238 100.0
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 1.5e-106 389.8 202 100.0
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 3.8e-102 375.2 202 98.0
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 3.8e-102 375.2 202 98.0
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 3.4e-95 352.1 184 98.9
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 1.2e-92 343.6 202 90.1
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 8.8e-91 337.4 207 85.5
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 8.8e-91 337.4 207 85.5
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 7.4e-90 334.3 200 87.5
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.7e-89 333.2 201 87.6
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 3.2e-85 318.9 200 84.5
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 9.4e-85 317.4 196 84.2
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.2e-84 317.0 200 82.5
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.6e-84 316.6 204 82.4
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 4.7e-84 315.1 196 83.7
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 4.7e-84 315.1 182 89.0
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 2.0e-79 299.7 237 69.2
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 3.1e-72 275.8 186 76.3
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.0e-70 270.8 193 74.1
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.8e-70 268.9 193 73.6
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 8.6e-70 267.7 191 73.8
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.5e-69 266.9 202 68.8
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 5.5e-69 265.0 183 74.9
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.6e-68 263.5 174 76.4
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 6.1e-68 261.5 192 69.8
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 8.0e-68 261.2 169 78.1
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 1.0e-67 260.8 180 74.4
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.0e-67 260.8 174 74.7
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.0e-67 260.8 186 72.6
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.8e-67 260.0 180 74.4
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 2.3e-67 259.6 179 72.6
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.3e-67 259.6 196 69.9
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 3.0e-67 259.2 180 73.3
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 4.0e-67 258.8 179 73.2
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 5.2e-67 258.5 171 77.8
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 2.6e-66 256.1 173 74.6
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 4.4e-66 255.4 197 66.5
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 9.8e-66 254.2 195 69.2
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 3.7e-65 252.3 175 72.6
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 3.7e-65 252.3 189 70.4
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 4.9e-65 251.9 193 68.4
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 6.3e-65 251.5 150 81.3
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 6.3e-65 251.5 176 71.6
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 3.1e-64 249.2 196 66.3
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 4.1e-64 248.8 175 69.7
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 4.1e-64 248.8 183 69.4
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 5.4e-64 248.4 196 67.3
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 5.4e-64 248.4 174 70.7
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 5.4e-64 248.4 189 68.3
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 9.2e-64 247.7 176 72.2
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.0e-63 246.5 184 71.2
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 2.0e-63 246.5 176 72.7
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 3.5e-63 245.7 179 68.7
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.5e-63 245.7 176 73.9
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 3.5e-63 245.7 172 72.1
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 4.5e-63 245.4 176 68.8
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.9e-63 245.0 181 67.4
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 5.9e-63 245.0 188 69.7
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 7.8e-63 244.6 179 68.2
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.8e-63 244.6 170 71.8
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 7.8e-63 244.6 195 66.7
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 2.3e-62 243.0 171 71.9
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 3.8e-62 242.3 192 64.6
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 3.8e-62 242.3 170 71.2
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 3.8e-62 242.3 193 63.2
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 6.6e-62 241.5 193 63.7
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.6e-62 241.5 181 66.9
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 8.6e-62 241.1 176 67.6
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 8.6e-62 241.1 168 70.2
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.1e-61 240.7 173 68.2
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 2.5e-61 239.6 191 64.4
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.5e-61 239.6 175 69.1
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 4.3e-61 238.8 181 66.9
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 7.3e-61 238.0 162 72.8
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 7.3e-61 238.0 193 65.3
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-60 237.3 173 69.4
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 2.8e-60 236.1 176 68.8
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 4.7e-60 235.3 181 65.2
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 4.7e-60 235.3 183 66.1
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.0e-59 234.2 193 64.8
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 1.0e-59 234.2 232 53.4
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.4e-59 233.8 183 66.1
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 1.4e-59 233.8 175 68.6
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.0e-59 232.3 184 65.8
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 4.0e-59 232.3 192 64.1
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.5e-58 230.3 156 70.5
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.5e-58 230.3 156 70.5
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 2.6e-58 229.6 206 59.2
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 4.4e-58 228.8 165 68.5
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 5.8e-58 228.4 195 61.5
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 9.8e-58 227.6 173 68.2
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 3.7e-57 225.7 171 65.5
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 4.9e-57 225.3 177 70.6
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 4.9e-57 225.3 175 67.4
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 4.9e-57 225.3 173 65.3
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 6.4e-57 224.9 185 62.2
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 6.4e-57 224.9 192 62.0
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 8.3e-57 224.6 176 64.8
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 1.1e-56 224.2 194 58.8
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.4e-56 223.8 171 63.7
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 1.4e-56 223.8 172 67.4
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.4e-56 223.8 171 67.8
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.9e-56 223.4 198 64.1
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.9e-56 223.4 189 61.4
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.2e-56 222.6 171 63.7
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 4.1e-56 222.2 173 65.3
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 4.1e-56 222.2 173 64.2
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 5.4e-56 221.9 226 57.5
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 7.0e-56 221.5 173 64.7
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-55 220.7 194 61.3
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 1.0e-54 217.6 169 66.3
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.3e-54 217.2 168 65.5
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.0e-54 216.1 172 62.2
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 4.3e-53 212.2 216 55.6
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 7.3e-53 211.5 170 64.1
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 9.5e-53 211.1 200 59.5
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 3.6e-52 209.1 191 58.6
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 1.4e-51 207.2 174 60.9
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.0e-50 203.4 193 55.4
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.6e-50 203.0 152 66.4
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 3.7e-49 199.1 187 57.8
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.9e-48 196.8 169 59.8
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 1.2e-44 184.1 181 54.1
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.3e-43 179.9 222 47.7
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 6.8e-43 178.3 143 62.2
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 3.4e-42 176.0 158 53.2
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.1e-40 169.1 169 52.7
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.6e-38 161.8 189 46.6
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.4e-35 154.1 189 46.6
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 3.4e-34 149.4 104 73.1
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 2.4e-32 143.3 103 67.0
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.2e-32 142.9 178 46.1
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 5.4e-32 142.1 109 67.0
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 7.1e-32 141.7 93 71.0
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.8e-31 138.3 113 61.9
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.0e-30 136.3 84 76.2
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.6e-28 130.6 127 56.7
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 2.8e-28 129.8 141 52.5
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.6e-28 129.4 167 46.1
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.7e-28 129.0 102 66.7
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 4.7e-28 129.0 172 42.4
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 8.1e-28 128.3 98 65.3
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 2.9e-25 119.8 87 66.7
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 9.3e-24 114.8 99 56.6
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 3.9e-22 109.4 64 89.1
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.9e-21 107.1 155 47.1
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 2.5e-21 106.7 82 67.1
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.8e-19 100.5 145 44.1
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 2.4e-19 100.1 87 60.9
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.3e-17 94.4 82 62.2
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 6.2e-12 75.5 76 51.3
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 1.1e-11 74.7 139 32.4
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.4e-11 74.3 50 86.0
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 1.4e-08 64.3 42 69.0
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.2e-08 63.2 49 69.4
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 6.0e-07 58.9 46 71.7


User provided reference genes

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