Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 2.0e-46 188.7 96 100.0
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 2.0e-46 188.7 96 100.0
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 2.0e-46 188.7 96 100.0
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 1.4e-39 166.0 96 89.6
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 3.2e-39 164.9 96 88.5
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 3.2e-39 164.9 96 88.5
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 2.7e-38 161.8 94 89.4
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 1.7e-37 159.1 96 88.5
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 1.7e-37 159.1 96 88.5
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 3.9e-37 157.9 88 89.8
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 4.3e-36 154.5 80 96.2
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 5.6e-36 154.1 96 83.3
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 4.7e-35 151.0 96 78.1
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 8.0e-35 150.2 90 80.0
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 1.8e-34 149.1 96 78.1
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 1.8e-34 149.1 84 82.1
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 3.1e-34 148.3 92 76.1
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 3.1e-34 148.3 92 76.1
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 4.0e-34 147.9 90 81.1
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 5.2e-34 147.5 96 79.2
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 8.9e-34 146.7 96 74.0
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 1.2e-33 146.4 90 78.9
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 7.5e-33 143.7 89 75.3
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 1.3e-32 142.9 92 76.1
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 2.9e-32 141.7 89 77.5
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 2.9e-32 141.7 95 73.7
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 3.7e-32 141.4 82 80.5
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 3.7e-32 141.4 96 72.9
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 4.9e-32 141.0 95 74.7
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 6.4e-32 140.6 95 72.6
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 6.4e-32 140.6 96 75.0
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 6.4e-32 140.6 84 78.6
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 6.4e-32 140.6 82 82.9
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 6.4e-32 140.6 79 84.8
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 6.4e-32 140.6 83 80.7
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 6.4e-32 140.6 92 78.3
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 8.3e-32 140.2 82 81.7
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 8.3e-32 140.2 88 79.5
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 8.3e-32 140.2 95 71.6
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 8.3e-32 140.2 81 82.7
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 1.4e-31 139.4 92 78.3
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 1.9e-31 139.0 85 80.0
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 1.9e-31 139.0 96 74.0
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 1.9e-31 139.0 82 80.5
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 2.4e-31 138.7 96 72.9
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 2.4e-31 138.7 90 74.4
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 3.2e-31 138.3 96 70.8
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 4.1e-31 137.9 90 73.3
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 4.1e-31 137.9 90 73.3
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 4.1e-31 137.9 91 73.6
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 4.1e-31 137.9 82 81.7
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 5.4e-31 137.5 93 73.1
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 5.4e-31 137.5 82 80.5
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 5.4e-31 137.5 87 75.9
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 5.4e-31 137.5 92 73.9
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 7.0e-31 137.1 87 75.9
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 7.0e-31 137.1 82 80.5
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 9.2e-31 136.7 82 79.3
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 9.2e-31 136.7 96 69.8
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 9.2e-31 136.7 93 72.0
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 9.2e-31 136.7 82 79.3
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 1.2e-30 136.3 82 79.3
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 1.2e-30 136.3 91 73.6
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 1.2e-30 136.3 87 78.2
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 1.2e-30 136.3 96 69.8
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.2e-30 136.3 96 69.8
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.2e-30 136.3 96 69.8
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.2e-30 136.3 96 69.8
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 1.2e-30 136.3 90 73.3
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 1.2e-30 136.3 93 71.0
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 1.6e-30 136.0 83 77.1
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 1.6e-30 136.0 82 78.0
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 2.0e-30 135.6 81 80.2
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 2.0e-30 135.6 92 70.7
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 2.0e-30 135.6 96 69.8
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 2.0e-30 135.6 82 79.3
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 2.0e-30 135.6 81 79.0
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 2.7e-30 135.2 83 78.3
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 2.7e-30 135.2 81 79.0
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 3.5e-30 134.8 81 77.8
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 3.5e-30 134.8 82 78.0
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 4.6e-30 134.4 82 78.0
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 4.6e-30 134.4 82 78.0
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 6.0e-30 134.0 82 79.3
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 6.0e-30 134.0 83 77.1
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 1.0e-29 133.3 80 80.0
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.0e-29 133.3 83 78.3
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 1.0e-29 133.3 80 80.0
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 1.0e-29 133.3 80 80.0
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 1.0e-29 133.3 80 80.0
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 1.3e-29 132.9 79 81.0
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 1.3e-29 132.9 82 76.8
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 2.3e-29 132.1 96 70.8
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 2.3e-29 132.1 95 70.5
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 3.0e-29 131.7 93 73.1
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 3.0e-29 131.7 81 76.5
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 5.0e-29 131.0 85 75.3
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 5.0e-29 131.0 82 75.6
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 5.0e-29 131.0 79 81.0
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 1.1e-28 129.8 110 65.5
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 4.3e-28 127.9 81 76.5
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 5.6e-28 127.5 122 57.4
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 5.6e-28 127.5 93 69.9
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 9.5e-28 126.7 90 72.2
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 1.2e-27 126.3 80 77.5
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 8.0e-27 123.6 82 70.7
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 1.8e-26 122.5 95 65.3
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 3.1e-26 121.7 92 64.1
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 5.2e-26 120.9 78 73.1
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 1.2e-25 119.8 78 74.4
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 5.8e-25 117.5 68 80.9
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 7.5e-25 117.1 78 71.8
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 2.1e-22 109.0 78 69.2
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 1.7e-21 105.9 132 47.0
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 1.7e-21 105.9 144 44.4
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 8.6e-21 103.6 61 80.3
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 1.9e-20 102.4 71 74.6
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 5.4e-15 84.3 91 51.6
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.7e-13 79.3 51 76.5
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.7e-13 79.3 51 76.5
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.7e-13 79.3 51 76.5
Actinidia00310 Actinidia chinensis HOM05D006528 ORTHO05D008117 3.6e-11 71.6 49 69.4
Gorai.013G055100 Gossypium raimondii HOM05D006528 ORTHO05D008117 5.4e-07 57.8 37 73.0


User provided reference genes

Program Settings