Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p04900 Brassica napus HOM05D002412 ORTHO05D002516 2.0e-101 372.5 189 100.0
A01p04520 Brassica napus HOM05D002412 ORTHO05D002516 8.8e-86 320.5 169 97.0
BraA01t00437Z Brassica rapa HOM05D002412 ORTHO05D002516 1.4e-83 313.2 169 94.7
BolC1t00474H Brassica oleracea HOM05D002412 ORTHO05D002516 3.4e-77 292.0 148 100.0
BcaC09g52190 Brassica carinata HOM05D002412 ORTHO05D002516 2.9e-68 262.3 133 100.0
A03p62330 Brassica napus HOM05D002412 ORTHO05D002516 3.1e-62 242.3 150 85.3
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 3.1e-62 242.3 150 85.3
BolC7t46433H Brassica oleracea HOM05D002412 ORTHO05D002516 7.5e-61 237.7 151 84.8
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 2.2e-60 236.1 155 81.3
C07p59890 Brassica napus HOM05D002412 ORTHO05D002516 2.9e-60 235.7 151 84.1
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 3.7e-60 235.3 153 83.0
AT4G33800 Arabidopsis thaliana HOM05D002412 ORTHO05D002516 8.3e-60 234.2 165 80.6
Sp7g31540 Schrenkiella parvula HOM05D002412 ORTHO05D002516 1.7e-57 226.5 154 79.2
BcaNung04670 Brassica carinata HOM05D002412 ORTHO05D002516 1.9e-56 223.0 180 72.8
CARHR241890 Cardamine hirsuta HOM05D002412 ORTHO05D002516 3.3e-56 222.2 167 75.4
AL7G17660 Arabidopsis lyrata HOM05D002412 ORTHO05D002516 2.8e-55 219.2 168 75.6
Thhalv10026460m.g Eutrema salsugineum HOM05D002412 ORTHO05D002516 3.6e-55 218.8 153 76.5
Carub.0007s0663 Capsella rubella HOM05D002412 ORTHO05D002516 1.9e-51 206.5 170 71.8
BcaC01g00964 Brassica carinata HOM05D002412 ORTHO05D002516 2.2e-44 183.0 151 69.5
THA.LOC104807210 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 4.2e-35 152.1 187 52.9
Aa31LG2G17080 Aethionema arabicum HOM05D002412 ORTHO05D002516 3.7e-23 112.5 150 51.3
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 2.9e-20 102.8 184 39.7
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 4.9e-20 102.1 186 42.5
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 1.9e-19 100.1 175 41.7
TPR.G8322 Trifolium pratense HOM05D002412 ORTHO05D002516 3.2e-19 99.4 175 41.7
QL11p029982 Quercus lobata HOM05D002412 ORTHO05D002516 4.6e-18 95.5 194 39.7
Haze_10271 Corylus avellana HOM05D002412 ORTHO05D002516 7.9e-18 94.7 184 38.0
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 1.8e-17 93.6 168 40.5
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 3.0e-17 92.8 185 38.4
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 3.9e-17 92.4 192 38.5
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 3.9e-17 92.4 183 36.6
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 3.9e-17 92.4 186 40.9
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 5.1e-17 92.0 178 38.8
TPR.G21149 Trifolium pratense HOM05D002412 ORTHO05D002516 5.1e-17 92.0 180 40.0
TWI59G0380 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.5e-16 90.5 198 38.9
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 1.9e-16 90.1 182 40.1
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 2.5e-16 89.7 166 39.2
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 2.5e-16 89.7 182 40.1
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 2.5e-16 89.7 157 40.8
Solyc01g106910.4 Solanum lycopersicum HOM05D002412 ORTHO05D002516 2.5e-16 89.7 180 35.6
Thecc.02G118800 Theobroma cacao HOM05D002412 ORTHO05D002516 2.5e-16 89.7 183 38.8
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 3.3e-16 89.4 175 37.1
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.3e-16 89.0 183 38.8
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 4.3e-16 89.0 183 38.8
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 2.1e-15 86.7 180 37.2
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 2.1e-15 86.7 169 39.1
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 2.8e-15 86.3 186 36.6
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.7e-15 85.9 183 38.3
Medtr1g106080 Medicago truncatula HOM05D002412 ORTHO05D002516 3.7e-15 85.9 184 38.6
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 8.2e-15 84.7 179 38.0
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 8.2e-15 84.7 174 37.4
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 2.4e-14 83.2 165 40.6
Sabra09G0066300 Salix brachista HOM05D002412 ORTHO05D002516 3.1e-14 82.8 182 38.5
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 3.1e-14 82.8 188 36.2
Prupe.8G147000 Prunus persica HOM05D002412 ORTHO05D002516 4.0e-14 82.4 194 34.5
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 5.3e-14 82.0 169 37.3
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 5.3e-14 82.0 187 38.0
Lalb_Chr21g0308011 Lupinus albus HOM05D002412 ORTHO05D002516 5.3e-14 82.0 186 36.6
Potri.001G292100 Populus trichocarpa HOM05D002412 ORTHO05D002516 6.9e-14 81.6 209 32.5
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 6.9e-14 81.6 160 38.8
Sabra16G0182100 Salix brachista HOM05D002412 ORTHO05D002516 6.9e-14 81.6 203 33.5
ECA236G2487 Erigeron canadensis HOM05D002412 ORTHO05D002516 9.0e-14 81.3 173 35.3
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.2e-13 80.9 162 37.0
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 2.6e-13 79.7 174 35.6
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 2.6e-13 79.7 161 37.9
Actinidia00360 Actinidia chinensis HOM05D002412 ORTHO05D002516 5.8e-13 78.6 185 36.2
Rhsim05G0091500 Rhododendron simsii HOM05D002412 ORTHO05D002516 5.8e-13 78.6 179 37.4
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.0e-12 77.8 169 36.1
VMungo0720G0862 Vigna mungo HOM05D002412 ORTHO05D002516 1.0e-12 77.8 186 37.6
RhsimUnG0041400 Rhododendron simsii HOM05D002412 ORTHO05D002516 1.3e-12 77.4 162 42.6
RhsimUnG0123400 Rhododendron simsii HOM05D002412 ORTHO05D002516 1.3e-12 77.4 162 42.6
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 2.2e-12 76.6 175 36.6
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 2.2e-12 76.6 169 35.5
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 2.2e-12 76.6 172 37.2
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 2.2e-12 76.6 179 35.2
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 2.9e-12 76.3 181 39.2
Ca_11030_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 3.8e-12 75.9 193 36.3
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 3.8e-12 75.9 158 38.0
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.8e-12 75.9 169 35.5
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 3.8e-12 75.9 159 37.7
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 4.9e-12 75.5 176 34.7
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 4.9e-12 75.5 167 40.1
Potri.009G086600 Populus trichocarpa HOM05D002412 ORTHO05D002516 4.9e-12 75.5 191 36.6
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 6.5e-12 75.1 174 37.4
Ah.01g007050 Amaranthus hybridus HOM05D002412 ORTHO05D002516 8.4e-12 74.7 196 34.2
Nitab4.5_0007781g0010 Nicotiana tabacum HOM05D002412 ORTHO05D002516 8.4e-12 74.7 177 35.6
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 1.4e-11 73.9 170 34.7
CAN.G606.66 Capsicum annuum HOM05D002412 ORTHO05D002516 1.9e-11 73.6 177 35.6
DCAR_001741 Daucus carota HOM05D002412 ORTHO05D002516 1.9e-11 73.6 187 36.4
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 1.9e-11 73.6 178 38.2
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 1.9e-11 73.6 173 37.6
MELO3C016826.2 Cucumis melo HOM05D002412 ORTHO05D002516 2.5e-11 73.2 172 31.4
Glyma.20G135500 Glycine max HOM05D002412 ORTHO05D002516 2.5e-11 73.2 177 36.2
SalBow6G4199 Salvia bowleyana HOM05D002412 ORTHO05D002516 2.5e-11 73.2 167 37.7
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 2.5e-11 73.2 166 38.6
MSTRG.20224 Avicennia marina HOM05D002412 ORTHO05D002516 4.2e-11 72.4 190 32.1
C03p86390 Brassica napus HOM05D057568 ORTHO05D041454 4.2e-11 72.4 47 78.7
BolC3t20931H Brassica oleracea HOM05D057568 ORTHO05D041454 4.2e-11 72.4 47 78.7
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 4.2e-11 72.4 173 35.8
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 5.5e-11 72.0 147 39.5
Glyma.10G256100 Glycine max HOM05D002412 ORTHO05D002516 5.5e-11 72.0 177 35.6
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 7.1e-11 71.6 161 35.4
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 9.3e-11 71.2 172 36.0
Psat6g214680 Pisum sativum HOM05D002412 ORTHO05D002516 9.3e-11 71.2 183 34.4
Lj5g0012685 Lotus japonicus HOM05D002412 ORTHO05D002516 1.2e-10 70.9 189 33.3
PGSC0003DMG400025836 Solanum tuberosum HOM05D002412 ORTHO05D002516 1.6e-10 70.5 179 34.6
Nitab4.5_0001458g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 2.7e-10 69.7 181 37.6
Nitab4.5_0002040g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 2.7e-10 69.7 178 35.4
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 2.7e-10 69.7 168 37.5
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.5e-10 69.3 174 35.1
Phvul.007G046700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 3.5e-10 69.3 181 36.5
Rhsim05G0092300 Rhododendron simsii HOM05D002412 ORTHO05D002516 3.5e-10 69.3 179 35.8
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 4.6e-10 68.9 183 32.2
Lalb_Chr02g0144931 Lupinus albus HOM05D002412 ORTHO05D002516 4.6e-10 68.9 183 35.5
Psat0ss7070g0040 Pisum sativum HOM05D002412 ORTHO05D002516 4.6e-10 68.9 167 38.3
ClCG10G010090 Citrullus lanatus HOM05D002412 ORTHO05D002516 6.1e-10 68.6 190 32.6
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 6.1e-10 68.6 174 35.1
PSO017G0848 Papaver somniferum HOM05D002412 ORTHO05D002516 6.1e-10 68.6 175 36.6
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 7.9e-10 68.2 180 34.4
Medtr5g005230 Medicago truncatula HOM05D002412 ORTHO05D002516 1.0e-09 67.8 175 32.0
PSO170G3219 Papaver somniferum HOM05D002412 ORTHO05D002516 1.8e-09 67.0 165 39.4
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 1.8e-09 67.0 179 35.2
CiPaw.06G164900 Carya illinoinensis HOM05D002412 ORTHO05D002516 2.3e-09 66.6 191 31.4
ECA246G2811 Erigeron canadensis HOM05D002412 ORTHO05D002516 2.3e-09 66.6 126 38.9
Eucgr.I01046 Eucalyptus grandis HOM05D002412 ORTHO05D002516 2.3e-09 66.6 203 32.0
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 2.3e-09 66.6 187 30.5
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 2.3e-09 66.6 177 37.9
MSTRG.16674 Avicennia marina HOM05D002412 ORTHO05D002516 3.0e-09 66.2 184 33.7
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 3.0e-09 66.2 169 36.1
CsaV3_4G000130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 3.0e-09 66.2 180 33.9
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 5.1e-09 65.5 157 38.2
Lj5g0023078 Lotus japonicus HOM05D002412 ORTHO05D002516 5.1e-09 65.5 171 37.4
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 5.1e-09 65.5 172 35.5
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 5.1e-09 65.5 169 33.7
Sed0020406 Sechium edule HOM05D002412 ORTHO05D002516 5.1e-09 65.5 174 32.2
TWI14G1286 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 5.1e-09 65.5 187 35.3
AUR62041661 Chenopodium quinoa HOM05D002412 ORTHO05D002516 8.7e-09 64.7 169 31.4
DCAR_029176 Daucus carota HOM05D002412 ORTHO05D002516 8.7e-09 64.7 155 35.5
Actinidia34355 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.1e-08 64.3 182 35.7
TPR.G33675 Trifolium pratense HOM05D002412 ORTHO05D002516 1.1e-08 64.3 164 36.6
DCAR_020053 Daucus carota HOM05D002412 ORTHO05D002516 1.5e-08 63.9 172 33.1
Glyma.04G046600 Glycine max HOM05D002412 ORTHO05D002516 1.5e-08 63.9 180 33.3
Peaxi162Scf00003g00288 Petunia axillaris HOM05D002412 ORTHO05D002516 1.5e-08 63.9 130 38.5
Sed0010289 Sechium edule HOM05D002412 ORTHO05D002516 1.5e-08 63.9 180 34.4
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 1.5e-08 63.9 174 32.8
vmacro01953 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 1.5e-08 63.9 177 36.2
RcHm_v2.0_Chr6g0252561 Rosa chinensis HOM05D002412 ORTHO05D002516 1.9e-08 63.5 193 33.2
CiPaw.08G050800 Carya illinoinensis HOM05D002412 ORTHO05D002516 2.5e-08 63.2 174 36.2
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 2.5e-08 63.2 174 32.8
CsaV3_2G026020 Cucumis sativus L. HOM05D002412 ORTHO05D002516 4.3e-08 62.4 163 34.4
Lalb_Chr11g0062941 Lupinus albus HOM05D002412 ORTHO05D002516 4.3e-08 62.4 170 35.3
Ca_24361_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 5.7e-08 62.0 122 43.4
MD10G1108100 Malus domestica HOM05D002412 ORTHO05D002516 9.7e-08 61.2 201 32.8
CiPaw.05G019200 Carya illinoinensis HOM05D002412 ORTHO05D002516 1.3e-07 60.8 126 37.3
ClCG05G020680 Citrullus lanatus HOM05D002412 ORTHO05D002516 1.6e-07 60.5 170 33.5
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 1.6e-07 60.5 129 38.8
CANSAT25G2021 Cannabis sativa HOM05D002412 ORTHO05D002516 2.2e-07 60.1 165 34.5
MD05G1102500 Malus domestica HOM05D002412 ORTHO05D002516 2.8e-07 59.7 206 33.0
PGR083G2271 Punica granatum HOM05D002412 ORTHO05D002516 2.8e-07 59.7 168 32.1
ATR0739G138 Amborella trichopoda HOM05D002412 ORTHO05D002516 3.7e-07 59.3 117 43.6
CSS0009619 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 3.7e-07 59.3 174 33.3
Glyma.17G234000 Glycine max HOM05D002412 ORTHO05D002516 3.7e-07 59.3 174 33.9
Nitab4.5_0003725g0030 Nicotiana tabacum HOM05D002412 ORTHO05D002516 3.7e-07 59.3 170 34.1
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 3.7e-07 59.3 152 36.8
Sp2g05130 Schrenkiella parvula HOM05D014607 ORTHO05D016575 3.7e-07 59.3 148 36.5
Sc15g0005620 Simmondsia chinensis HOM05D002412 ORTHO05D002516 6.3e-07 58.5 171 33.3
FAN15G1065 Fragaria x ananassa HOM05D002412 ORTHO05D002516 8.2e-07 58.2 212 26.9
Thhalv10023721m.g Eutrema salsugineum HOM05D014607 ORTHO05D016575 1.1e-06 57.8 123 38.2
MBI16_g37755_MAGBIO Magnolia biondii HOM05D002412 ORTHO05D002516 1.1e-06 57.8 80 43.8
EL10Ac9g22186 Beta vulgaris HOM05D002412 ORTHO05D002516 1.8e-06 57.0 183 33.3
DCAR_009875 Daucus carota HOM05D002412 ORTHO05D002516 1.8e-06 57.0 169 32.5
Gorai.009G220800 Gossypium raimondii HOM05D002412 ORTHO05D002516 1.8e-06 57.0 129 35.7
MELO3C010796.2 Cucumis melo HOM05D002412 ORTHO05D002516 2.4e-06 56.6 163 32.5
FAN15G1641 Fragaria x ananassa HOM05D002412 ORTHO05D002516 2.4e-06 56.6 188 30.9
Sc02g0007970 Simmondsia chinensis HOM05D002412 ORTHO05D002516 2.4e-06 56.6 170 35.9
Cpa.g.sc106.37 Carica papaya HOM05D002412 ORTHO05D002516 3.1e-06 56.2 145 34.5
Cpa.g.sc142.41 Carica papaya HOM05D002412 ORTHO05D002516 3.1e-06 56.2 143 36.4
unitig_744.g24125 Utricularia gibba HOM05D002412 ORTHO05D002516 3.1e-06 56.2 167 31.7
ClCG08G016590 Citrullus lanatus HOM05D002412 ORTHO05D002516 4.1e-06 55.8 151 35.8
PGSC0003DMG401011556 Solanum tuberosum HOM05D002412 ORTHO05D002516 4.1e-06 55.8 177 33.9
GSVIVG01009322001 Vitis vinifera HOM05D002412 ORTHO05D002516 4.1e-06 55.8 101 40.6
FvH4_2g32900 Fragaria vesca HOM05D002412 ORTHO05D002516 5.3e-06 55.5 176 26.7
Lj4C72T9 Lonicera japonica HOM05D002412 ORTHO05D002516 6.9e-06 55.1 151 31.8
Sed0002993 Sechium edule HOM05D002412 ORTHO05D002516 6.9e-06 55.1 157 28.7
Sed0010950 Sechium edule HOM05D002412 ORTHO05D002516 9.0e-06 54.7 153 32.0
Solyc04g077690.3 Solanum lycopersicum HOM05D002412 ORTHO05D002516 9.0e-06 54.7 173 31.2


User provided reference genes

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