Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 3.7e-44 181.4 110 100.0
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 2.3e-38 162.2 99 98.0
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 8.9e-38 160.2 99 98.0
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 8.9e-38 160.2 99 98.0
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 6.2e-31 137.5 102 87.3
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 1.7e-28 129.4 102 68.6
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 1.9e-27 125.9 104 67.3
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 2.4e-27 125.6 102 80.4
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 3.2e-27 125.2 102 80.4
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 9.2e-27 123.6 102 63.7
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 9.2e-27 123.6 102 63.7
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 9.2e-27 123.6 102 79.4
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 1.6e-26 122.9 102 79.4
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 6.0e-26 120.9 102 68.6
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 6.0e-26 120.9 102 68.6
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 6.0e-26 120.9 102 68.6
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.9e-24 115.9 93 83.9
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 1.1e-22 110.2 102 74.5
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 1.8e-22 109.4 93 78.5
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 3.1e-22 108.6 93 76.3
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 8.9e-22 107.1 90 64.4
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 1.5e-21 106.3 93 64.5
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.5e-21 106.3 94 62.8
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 5.8e-21 104.4 92 79.3
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 1.7e-20 102.8 92 77.2
BcaNung04987 Brassica carinata HOM05D003477 ORTHO05D004043 2.2e-20 102.4 99 61.6
CARHR242520 Cardamine hirsuta HOM05D003477 ORTHO05D004043 2.2e-20 102.4 92 80.4
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 2.2e-20 102.4 92 79.3
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 6.4e-20 100.9 103 57.3
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 8.4e-20 100.5 105 59.0
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 8.4e-20 100.5 102 56.9
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 1.1e-19 100.1 102 57.8
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 1.1e-19 100.1 99 55.6
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 4.1e-19 98.2 99 55.6
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 7.1e-19 97.4 103 56.3
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 9.2e-19 97.1 103 57.3
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 1.6e-18 96.3 103 55.3
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 2.7e-18 95.5 101 54.5
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 2.7e-18 95.5 105 52.4
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 4.6e-18 94.7 102 52.9
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 1.0e-17 93.6 91 74.7
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 1.0e-17 93.6 91 74.7
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 1.0e-17 93.6 91 74.7
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 1.0e-17 93.6 91 74.7
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 1.3e-17 93.2 102 52.9
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 2.3e-17 92.4 101 54.5
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 3.0e-17 92.0 107 47.7
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 3.9e-17 91.7 101 54.5
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 5.1e-17 91.3 100 56.0
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 5.1e-17 91.3 97 61.9
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 6.6e-17 90.9 103 49.5
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 6.6e-17 90.9 103 49.5
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 6.6e-17 90.9 107 52.3
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 8.7e-17 90.5 97 55.7
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 1.1e-16 90.1 105 52.4
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 1.1e-16 90.1 99 54.5
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 1.5e-16 89.7 100 53.0
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 2.5e-16 89.0 110 49.1
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 3.3e-16 88.6 99 48.5
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 5.6e-16 87.8 102 53.9
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 5.6e-16 87.8 108 50.0
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 5.6e-16 87.8 103 51.5
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 7.3e-16 87.4 104 50.0
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 7.3e-16 87.4 101 50.5
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 9.6e-16 87.0 107 54.2
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 9.6e-16 87.0 106 52.8
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 1.2e-15 86.7 86 55.8
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.2e-15 86.7 94 54.3
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.6e-15 86.3 107 47.7
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 1.6e-15 86.3 108 49.1
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 1.6e-15 86.3 104 58.7
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 1.6e-15 86.3 108 52.8
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 2.8e-15 85.5 101 52.5
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 4.7e-15 84.7 103 50.5
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 4.7e-15 84.7 93 54.8
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 4.7e-15 84.7 111 50.5
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 6.2e-15 84.3 99 51.5
Ciclev10029666m.g Citrus clementina HOM05D003477 ORTHO05D004043 8.1e-15 84.0 102 51.0
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 1.1e-14 83.6 93 54.8
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 1.1e-14 83.6 93 53.8
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 1.4e-14 83.2 108 48.1
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.4e-14 83.2 93 53.8
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.1e-14 82.0 93 53.8
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 3.1e-14 82.0 91 53.8
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 6.9e-14 80.9 99 50.5
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 6.9e-14 80.9 107 49.5
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 6.9e-14 80.9 106 51.9
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 6.9e-14 80.9 108 51.9
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 9.0e-14 80.5 97 49.5
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 9.0e-14 80.5 94 48.9
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 1.2e-13 80.1 94 48.9
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.5e-13 79.7 99 50.5
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.4e-13 78.6 93 50.5
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 3.4e-13 78.6 97 49.5
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 3.4e-13 78.6 88 53.4
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 3.4e-13 78.6 102 55.9
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 4.4e-13 78.2 94 47.9
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.4e-13 78.2 92 54.3
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 5.8e-13 77.8 98 51.0
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 7.6e-13 77.4 107 50.5
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 9.9e-13 77.0 93 50.5
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.3e-12 76.6 98 48.0
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 1.3e-12 76.6 97 48.5
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 1.3e-12 76.6 82 51.2
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 1.7e-12 76.3 87 48.3
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 1.7e-12 76.3 97 48.5
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 1.7e-12 76.3 107 49.5
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 2.2e-12 75.9 90 44.4
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 2.9e-12 75.5 92 48.9
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 2.9e-12 75.5 92 48.9
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 6.4e-12 74.3 93 54.8
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 6.4e-12 74.3 93 54.8
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 1.1e-11 73.6 90 52.2
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 1.1e-11 73.6 93 52.7
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 1.9e-11 72.8 91 51.6
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 2.4e-11 72.4 96 47.9
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 3.2e-11 72.0 100 46.0
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 4.2e-11 71.6 100 45.0
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 7.1e-11 70.9 95 42.1
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 1.6e-10 69.7 93 45.2
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 2.7e-10 68.9 97 47.4
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 3.5e-10 68.6 99 47.5
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 4.6e-10 68.2 98 43.9
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 4.6e-10 68.2 95 44.2
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 6.0e-10 67.8 97 45.4
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 7.8e-10 67.4 91 47.3
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 1.0e-09 67.0 101 47.5
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 1.0e-09 67.0 94 42.6
MELO3C031999.2 Cucumis melo HOM05D003477 ORTHO05D013069 1.3e-09 66.6 50 64.0
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 1.3e-09 66.6 97 47.4
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 1.7e-09 66.2 88 46.6
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 2.3e-09 65.9 95 43.2
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 3.0e-09 65.5 95 46.3
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 3.0e-09 65.5 101 46.5
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 3.0e-09 65.5 92 45.7
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 3.0e-09 65.5 93 49.5
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 3.9e-09 65.1 52 61.5
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 3.9e-09 65.1 100 43.0
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 3.9e-09 65.1 90 47.8
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 5.1e-09 64.7 90 45.6
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 6.6e-09 64.3 98 48.0
HanXRQChr09g0251061 Helianthus annuus HOM05D003477 ORTHO05D004043 6.6e-09 64.3 90 45.6
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 6.6e-09 64.3 95 41.1
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 6.6e-09 64.3 94 42.6
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 1.1e-08 63.5 108 44.4
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.1e-08 63.5 93 48.4
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 1.5e-08 63.2 93 45.2
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 1.9e-08 62.8 91 41.8
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 1.9e-08 62.8 88 47.7
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 1.9e-08 62.8 52 59.6
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 2.5e-08 62.4 52 57.7
Actinidia27974 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.3e-08 62.0 38 76.3
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 3.3e-08 62.0 101 40.6
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 3.3e-08 62.0 49 61.2
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 3.3e-08 62.0 52 57.7
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 4.3e-08 61.6 95 49.5
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 4.3e-08 61.6 95 41.1
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 4.3e-08 61.6 51 56.9
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 5.6e-08 61.2 86 38.4
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 9.6e-08 60.5 90 43.3
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 1.3e-07 60.1 93 37.6
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.3e-07 60.1 46 56.5
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.6e-07 59.7 97 43.3
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.6e-07 59.7 97 43.3
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 1.6e-07 59.7 103 43.7
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.6e-07 59.7 95 40.0
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 1.6e-07 59.7 95 58.9
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 2.8e-07 58.9 94 44.7
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.6e-07 58.5 91 41.8
Glyma.01G190500 Glycine max HOM05D003477 ORTHO05D004043 4.8e-07 58.2 90 40.0
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 4.8e-07 58.2 88 42.0
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 6.2e-07 57.8 101 40.6
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 8.1e-07 57.4 91 41.8
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 1.4e-06 56.6 93 40.9
Cfa004078 Carpinus fangiana HOM05D003477 ORTHO05D004043 1.8e-06 56.2 47 55.3
TPR.G19065 Trifolium pratense HOM05D003477 ORTHO05D004043 3.1e-06 55.5 44 59.1
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 3.1e-06 55.5 52 51.9
Actinidia03815 Actinidia chinensis HOM05D003477 ORTHO05D004043 5.3e-06 54.7 84 47.6
Lalb_Chr05g0226121 Lupinus albus HOM05D003477 ORTHO05D004043 5.3e-06 54.7 89 40.4
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 5.3e-06 54.7 94 37.2
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 9.0e-06 53.9 86 46.5


User provided reference genes

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