Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 0.0e+00 1587.8 1191 100.0
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 0.0e+00 1500.3 1153 98.5
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 0.0e+00 1408.3 1217 90.7
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 0.0e+00 1405.2 1153 94.4
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 0.0e+00 1293.5 1178 83.0
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 0.0e+00 1189.9 1191 78.4
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 0.0e+00 1144.0 1163 81.7
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 0.0e+00 1104.4 1167 76.8
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 0.0e+00 1095.1 1168 76.5
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 2.4e-290 1002.7 1173 75.4
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 1.8e-261 906.7 968 83.5
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 5.7e-215 752.3 1168 65.1
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 8.4e-182 642.1 738 69.1
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 2.6e-143 514.2 1101 56.1
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 3.5e-140 503.8 1157 56.8
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 1.1e-138 498.8 1180 53.6
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 1.9e-138 498.0 1157 56.5
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 7.4e-138 496.1 1157 56.6
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 4.5e-135 486.9 256 94.5
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 4.5e-135 486.9 1169 52.2
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 8.5e-134 482.6 1168 52.4
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 2.7e-132 477.6 1169 52.1
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 2.8e-129 467.6 1189 47.1
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 4.8e-129 466.8 1172 48.5
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 2.4e-128 464.5 1188 54.4
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 4.1e-128 463.8 1175 55.5
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.5e-127 461.8 1008 60.8
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.5e-127 461.8 1153 50.6
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 1.7e-126 458.4 1141 55.8
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 2.2e-126 458.0 1192 44.7
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 6.5e-126 456.4 1218 49.1
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 9.4e-125 452.6 1152 47.0
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 6.7e-123 446.4 960 55.0
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 1.1e-122 445.7 1159 46.7
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 3.3e-122 444.1 1128 50.1
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 9.7e-122 442.6 1161 42.1
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.3e-121 442.2 1128 51.0
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 4.8e-121 440.3 1128 50.9
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 6.3e-121 439.9 1183 45.9
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.0e-119 434.9 1130 53.6
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 6.5e-118 429.9 1127 54.7
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 8.5e-118 429.5 1102 50.8
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 1.1e-117 429.1 1151 52.4
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 4.2e-117 427.2 1173 51.5
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 7.2e-117 426.4 1128 53.5
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 2.7e-116 424.5 1200 49.8
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 1.0e-115 422.5 690 76.1
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 1.4e-115 422.2 1197 54.3
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 5.2e-115 420.2 1174 52.8
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 6.7e-115 419.9 919 62.5
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 1.1e-114 419.1 1183 49.9
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 5.7e-114 416.8 1110 52.1
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 1.7e-113 415.2 1187 54.1
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 2.2e-113 414.8 699 69.7
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 2.4e-112 411.4 1144 49.4
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 1.6e-111 408.7 1198 51.9
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 1.6e-111 408.7 1163 53.1
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 3.5e-111 407.5 870 58.4
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 3.5e-111 407.5 828 66.2
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 4.5e-111 407.1 964 49.3
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.0e-110 406.0 850 59.8
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 1.7e-110 405.2 822 62.0
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 5.0e-110 403.7 1243 42.6
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 2.5e-109 401.4 1170 47.4
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 4.2e-109 400.6 1172 52.1
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 7.2e-109 399.8 1154 48.1
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 9.4e-109 399.4 925 50.8
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 1.6e-108 398.7 827 65.5
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 4.7e-108 397.1 850 56.7
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 8.0e-108 396.4 836 65.0
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 4.0e-107 394.0 1173 52.8
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 6.8e-107 393.3 1156 52.2
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 2.0e-106 391.7 1145 49.6
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 9.8e-106 389.4 947 52.2
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 8.3e-105 386.3 961 59.0
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 1.1e-104 386.0 1103 49.5
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 1.4e-104 385.6 830 61.3
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 4.1e-104 384.0 721 71.7
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 2.0e-103 381.7 822 61.2
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 2.5e-101 374.8 1177 47.9
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 3.2e-101 374.4 1256 41.3
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 2.1e-100 371.7 1145 51.5
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 3.6e-100 370.9 1166 49.1
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 4.7e-100 370.5 1057 45.0
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 1.1e-93 349.4 1159 50.8
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 6.1e-92 343.6 692 62.3
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 4.0e-91 340.9 854 56.2
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 8.9e-91 339.7 272 61.4
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 2.6e-90 338.2 1218 45.6
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 4.9e-89 334.0 1218 45.2
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 1.4e-88 332.4 1218 41.8
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.8e-88 332.0 770 55.1
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 2.3e-86 325.1 1164 46.2
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 1.5e-85 322.4 885 42.9
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 1.9e-85 322.0 1070 41.9
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 2.0e-82 312.0 699 58.8
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.7e-78 298.9 1070 53.8
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 5.4e-56 224.2 738 45.1
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.3e-52 213.0 698 51.1
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.4e-51 209.5 164 63.4
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 9.9e-42 176.8 284 44.0
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 1.3e-41 176.4 690 61.7
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 5.5e-40 171.0 704 49.9
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 8.2e-36 157.1 250 80.4
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.4e-35 156.4 278 37.1
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 3.4e-34 151.8 286 34.6
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 4.2e-32 144.8 123 57.7
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 9.3e-32 143.7 700 59.1
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.6e-31 142.9 742 57.5
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 4.6e-31 141.4 285 70.5
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 5.7e-29 134.4 293 60.4
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 1.3e-28 133.3 221 86.0
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 4.8e-28 131.3 152 44.1
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 5.3e-27 127.9 109 59.6
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 6.9e-27 127.5 242 76.9
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 9.0e-27 127.1 694 55.5
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 7.9e-23 114.0 129 49.6
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 1.3e-22 113.2 287 27.2
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 9.7e-21 107.1 107 50.5
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 2.6e-18 99.0 94 47.9
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.0e-17 97.1 109 49.5
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 9.1e-11 73.9 250 26.4
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.2e-07 63.5 64 84.4


User provided reference genes

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