Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 1.0e-104 383.6 229 100.0
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 1.0e-104 383.6 229 100.0
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 6.1e-89 331.3 240 89.6
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 1.6e-65 253.4 260 69.2
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 4.8e-62 241.9 274 64.2
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.8e-61 240.0 273 65.2
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 1.4e-53 213.8 281 59.1
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.1e-50 204.1 291 57.0
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 5.5e-50 201.8 270 55.9
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.0e-48 197.6 281 56.9
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 8.9e-48 194.5 281 58.0
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.3e-46 190.7 280 55.4
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 1.4e-40 170.6 265 55.8
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 2.2e-38 163.3 265 55.1
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 4.6e-36 155.6 227 56.8
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 7.8e-36 154.8 227 56.8
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 4.7e-33 145.6 272 45.2
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.1e-32 144.4 276 47.1
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 4.0e-32 142.5 261 47.9
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 2.0e-31 140.2 246 48.8
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 5.8e-31 138.7 244 48.8
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.3e-30 137.5 280 46.1
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 4.9e-30 135.6 247 50.2
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 4.9e-30 135.6 274 42.7
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 2.4e-29 133.3 265 44.5
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 4.1e-29 132.5 265 44.2
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 3.5e-28 129.4 301 43.9
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 7.8e-28 128.3 250 48.8
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.0e-27 127.9 314 42.4
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.7e-27 127.1 248 49.6
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.7e-27 127.1 248 49.6
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 4.4e-23 112.5 304 43.4
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 1.9e-21 107.1 228 41.2
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 2.1e-20 103.6 230 40.9
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.5e-18 96.7 248 44.0
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 7.3e-18 95.1 246 41.1
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.8e-17 93.2 134 57.5
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 8.1e-17 91.7 178 38.2
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 1.8e-16 90.5 222 40.5
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.1e-16 89.7 170 44.1
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 5.2e-16 89.0 208 35.1
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 8.9e-16 88.2 178 39.3
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.2e-15 87.8 209 43.1
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.6e-15 86.7 212 44.3
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 9.9e-15 84.7 203 44.3
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 2.2e-14 83.6 182 36.3
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 8.4e-14 81.6 208 41.3
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 2.4e-13 80.1 233 36.1
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 5.4e-13 79.0 276 30.4
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 7.1e-13 78.6 211 39.3
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 9.3e-13 78.2 301 30.9
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.2e-12 77.8 185 35.7
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.2e-12 77.8 185 35.7
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 2.1e-12 77.0 206 35.0
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.7e-12 76.6 206 36.4
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 7.8e-12 75.1 281 30.6
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 7.8e-12 75.1 296 31.4
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 7.8e-12 75.1 289 28.4
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.3e-11 74.3 168 36.9
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 1.3e-11 74.3 220 38.2
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.1e-11 72.4 177 42.4
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 5.1e-11 72.4 177 42.4
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 5.1e-11 72.4 177 35.6
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 8.7e-11 71.6 172 37.2
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 8.7e-11 71.6 172 37.2
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 1.5e-10 70.9 300 31.7
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.9e-10 70.5 264 33.3
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 1.9e-10 70.5 212 33.0
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 4.3e-10 69.3 213 38.5
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 7.3e-10 68.6 197 35.0
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 9.6e-10 68.2 180 33.3
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 9.6e-10 68.2 196 33.2
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 9.6e-10 68.2 266 29.7
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 1.6e-09 67.4 287 30.3
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 2.1e-09 67.0 191 33.0
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.8e-09 65.9 191 31.4
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 4.8e-09 65.9 208 40.9
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 6.2e-09 65.5 302 28.8
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 6.2e-09 65.5 178 41.0
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 6.2e-09 65.5 206 36.4
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 8.1e-09 65.1 168 35.7
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.1e-08 64.7 168 37.5
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.1e-08 64.7 211 41.2
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 1.4e-08 64.3 301 28.9
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 1.8e-08 63.9 216 32.4
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.8e-08 63.9 172 38.4
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 3.1e-08 63.2 221 30.3
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 4.0e-08 62.8 204 37.7
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 4.0e-08 62.8 204 37.7
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 4.0e-08 62.8 204 37.7
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 6.9e-08 62.0 208 38.5
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 6.9e-08 62.0 205 30.7
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 6.9e-08 62.0 205 30.7
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 6.9e-08 62.0 193 35.2
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 6.9e-08 62.0 202 30.2
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 6.9e-08 62.0 204 34.8
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 6.9e-08 62.0 225 34.2
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 9.0e-08 61.6 217 38.7
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.2e-07 61.2 202 29.7
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.2e-07 61.2 188 42.6
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.0e-07 60.5 191 34.6
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 2.0e-07 60.5 204 30.9
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 2.0e-07 60.5 193 35.2
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.6e-07 60.1 227 28.6
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 2.6e-07 60.1 216 34.3
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 3.4e-07 59.7 305 29.2
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 3.4e-07 59.7 179 31.8
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 3.4e-07 59.7 204 36.8
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 3.4e-07 59.7 193 35.2
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 4.4e-07 59.3 197 29.9
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 5.8e-07 58.9 198 31.8
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 7.6e-07 58.5 203 37.9
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.6e-07 58.5 219 37.9
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 7.6e-07 58.5 169 34.3
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.3e-06 57.8 220 33.6
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.3e-06 57.8 202 29.2
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.3e-06 57.8 300 29.0
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.3e-06 57.8 212 35.4
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 1.3e-06 57.8 300 28.3
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.7e-06 57.4 194 32.0
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 2.2e-06 57.0 191 31.9
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 2.2e-06 57.0 168 39.3
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 2.9e-06 56.6 259 31.3
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 3.8e-06 56.2 168 35.7
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 3.8e-06 56.2 205 28.8
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 3.8e-06 56.2 168 32.1
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 4.9e-06 55.8 169 34.3
A07p03430 Brassica napus HOM05D004420 ORTHO05D005048 6.4e-06 55.5 156 35.9


User provided reference genes

Program Settings