Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 9.6e-65 250.0 124 100.0
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 9.6e-65 250.0 124 100.0
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 9.6e-65 250.0 124 100.0
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 6.2e-64 247.3 124 99.2
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 6.2e-64 247.3 124 99.2
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-63 245.0 124 98.4
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 2.2e-61 238.8 124 93.5
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.4e-61 236.9 124 93.5
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 1.4e-60 236.1 124 93.5
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 2.5e-60 235.3 124 93.5
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 7.1e-60 233.8 124 92.7
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.7e-59 231.9 124 92.7
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 3.5e-59 231.5 124 91.9
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 4.6e-59 231.1 124 92.7
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 4.6e-59 231.1 124 91.9
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 4.6e-59 231.1 124 92.7
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 6.0e-59 230.7 124 91.9
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 7.9e-59 230.3 124 92.7
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 7.9e-59 230.3 124 92.7
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 7.9e-59 230.3 124 92.7
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.3e-58 229.6 124 91.9
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-58 229.6 124 91.9
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.3e-58 229.6 124 91.9
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-57 226.1 124 91.1
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.3e-57 224.6 124 91.1
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.4e-57 223.8 124 90.3
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.3e-56 223.0 124 89.5
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.6e-56 222.6 124 89.5
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 4.8e-56 221.1 124 88.7
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 9.7e-49 196.8 124 79.8
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.0e-42 175.3 126 72.2
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 6.7e-42 174.1 126 71.4
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 7.4e-41 170.6 126 69.0
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 9.7e-41 170.2 126 69.8
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.8e-40 167.9 126 71.4
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 1.1e-39 166.8 126 68.3
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.2e-30 136.7 132 59.1
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 9.4e-28 127.1 127 59.1
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.2e-27 126.7 124 60.5
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.5e-21 104.4 103 56.3
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 1.5e-20 103.2 126 47.6
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 7.2e-20 100.9 137 46.7
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 9.4e-20 100.5 123 49.6
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 3.6e-19 98.6 127 50.4
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 1.0e-18 97.1 119 49.6
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 1.0e-18 97.1 122 48.4
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 1.8e-18 96.3 135 46.7
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 4.0e-18 95.1 120 49.2
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 5.2e-18 94.7 122 46.7
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 6.8e-18 94.4 122 46.7
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 8.8e-18 94.0 126 47.6
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 8.8e-18 94.0 123 47.2
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 1.2e-17 93.6 118 47.5
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 1.2e-17 93.6 122 45.9
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.5e-17 93.2 123 47.2
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 2.0e-17 92.8 137 48.2
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 7.5e-17 90.9 122 45.1
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 9.8e-17 90.5 117 47.9
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 9.8e-17 90.5 123 45.5
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 9.8e-17 90.5 129 46.5
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.7e-16 89.7 138 43.5
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.7e-16 89.7 138 43.5
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 2.2e-16 89.4 127 43.3
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 2.2e-16 89.4 136 42.6
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 2.2e-16 89.4 127 45.7
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 2.8e-16 89.0 133 43.6
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 3.7e-16 88.6 127 43.3
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 4.8e-16 88.2 129 43.4
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 4.8e-16 88.2 119 47.1
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.3e-16 87.8 133 42.9
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 6.3e-16 87.8 143 37.8
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 6.3e-16 87.8 135 43.0
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 6.3e-16 87.8 123 45.5
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 8.3e-16 87.4 127 44.9
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.1e-15 87.0 141 42.6
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.8e-15 86.3 123 44.7
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.8e-15 86.3 131 48.1
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 1.8e-15 86.3 125 42.4
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 3.1e-15 85.5 128 44.5
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 4.1e-15 85.1 127 44.1
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 5.4e-15 84.7 122 43.4
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 5.4e-15 84.7 134 45.5
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 7.0e-15 84.3 126 40.5
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 9.1e-15 84.0 118 43.2
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 9.1e-15 84.0 128 42.2
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.2e-14 83.6 130 45.4
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.6e-14 83.2 120 45.0
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.6e-14 83.2 134 41.0
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.6e-14 83.2 124 41.9
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 2.0e-14 82.8 128 42.2
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 2.7e-14 82.4 125 44.0
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 3.5e-14 82.0 132 38.6
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 3.5e-14 82.0 123 43.1
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 4.5e-14 81.6 127 43.3
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 4.5e-14 81.6 124 42.7
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 1.7e-13 79.7 134 37.3
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.8e-13 78.6 131 41.2
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 5.0e-13 78.2 129 40.3
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 5.0e-13 78.2 129 40.3
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 5.0e-13 78.2 129 40.3
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.0e-13 78.2 125 43.2
AT2G18200 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 8.5e-13 77.4 81 55.6
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 8.5e-13 77.4 134 40.3
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.5e-13 77.4 130 43.8
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.5e-13 77.4 129 36.4
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-12 77.0 130 40.0
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.1e-12 77.0 130 40.0
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 1.1e-12 77.0 125 40.0
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 1.1e-12 77.0 132 39.4
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-12 76.6 128 35.9
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 1.5e-12 76.6 121 40.5
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.9e-12 76.3 131 38.9
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 1.9e-12 76.3 130 38.5
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.5e-12 75.9 131 38.9
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 3.2e-12 75.5 131 38.9
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.2e-12 75.5 136 38.2
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 4.2e-12 75.1 95 45.3
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 5.5e-12 74.7 135 41.5
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 2.1e-11 72.8 144 38.9
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 2.7e-11 72.4 120 40.8
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.6e-11 72.0 129 37.2
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 3.6e-11 72.0 115 39.1
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 8.0e-11 70.9 123 39.8
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 8.0e-11 70.9 123 39.8
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.4e-10 70.1 113 42.5
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 1.4e-10 70.1 113 42.5
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 1.8e-10 69.7 130 33.8
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 1.8e-10 69.7 130 33.8
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 1.8e-10 69.7 130 33.8
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 2.3e-10 69.3 124 37.9
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 4.0e-10 68.6 125 34.4
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.2e-09 67.0 133 33.1
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 1.5e-09 66.6 130 36.9
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 2.0e-09 66.2 125 37.6
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.4e-09 65.1 129 36.4
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 4.4e-09 65.1 127 38.6
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 9.8e-09 63.9 116 37.1
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 9.8e-09 63.9 134 35.1
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 9.8e-09 63.9 123 37.4
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.3e-08 63.5 129 34.1
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-08 63.5 135 34.1
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 1.7e-08 63.2 135 34.1
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.7e-08 62.0 120 39.2
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 4.9e-08 61.6 137 34.3
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 8.3e-08 60.8 149 31.5
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 8.3e-08 60.8 111 42.3
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.1e-07 60.5 123 38.2
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 1.1e-07 60.5 114 39.5
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.1e-07 60.5 114 40.4
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 1.8e-07 59.7 39 61.5
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.8e-07 59.7 112 33.0
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.8e-07 59.7 117 30.8
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 2.4e-07 59.3 112 36.6
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 2.4e-07 59.3 114 39.5
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 3.1e-07 58.9 102 40.2
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 3.1e-07 58.9 112 39.3
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 7.0e-07 57.8 49 51.0
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 7.0e-07 57.8 123 37.4
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 9.2e-07 57.4 114 40.4
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.6e-06 56.6 115 40.0
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 2.0e-06 56.2 113 38.9
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 2.0e-06 56.2 111 38.7
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 2.7e-06 55.8 116 37.1
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 2.7e-06 55.8 116 37.1
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.7e-06 55.8 113 38.1
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.7e-06 55.8 115 38.3
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 5.9e-06 54.7 81 38.3
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 7.7e-06 54.3 109 34.9
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 7.7e-06 54.3 117 38.5


User provided reference genes

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