Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 2.4e-275 951.4 453 100.0
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 2.4e-275 951.4 453 100.0
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 9.3e-275 949.5 453 99.8
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.5e-269 932.2 453 97.4
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.6e-269 931.4 453 97.4
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 4.2e-251 870.9 453 90.1
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 6.1e-250 867.1 452 89.6
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.8e-249 865.5 452 90.9
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 1.2e-245 852.8 452 88.1
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.2e-245 852.8 453 88.1
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 4.5e-245 850.9 452 88.1
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 5.0e-244 847.4 453 87.6
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 5.0e-244 847.4 453 87.6
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 6.5e-244 847.0 453 87.4
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 8.5e-244 846.7 453 87.2
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 8.5e-244 846.7 453 87.2
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 4.7e-242 840.9 452 86.7
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.0e-241 839.7 453 87.0
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.3e-241 838.6 453 86.5
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 7.4e-240 833.6 452 85.8
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 9.7e-240 833.2 453 86.3
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 3.7e-239 831.2 453 86.1
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 5.0e-236 820.8 453 84.1
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.6e-234 814.7 453 83.0
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.6e-234 814.7 451 83.1
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.7e-234 814.3 453 83.0
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 6.1e-234 813.9 451 83.6
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.0e-233 813.1 453 83.0
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 2.3e-233 812.0 453 82.8
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 5.2e-233 810.8 452 84.7
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 8.8e-233 810.1 453 82.8
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 3.3e-232 808.1 451 82.3
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.4e-232 807.7 449 83.3
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 9.7e-232 806.6 453 81.9
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 3.7e-231 804.7 453 81.7
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 4.8e-231 804.3 483 79.3
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 8.2e-231 803.5 453 81.2
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 8.2e-231 803.5 451 82.9
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.1e-230 803.1 463 81.0
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 1.8e-230 802.4 446 82.3
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.8e-230 802.4 453 81.7
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 3.1e-230 801.6 450 82.2
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 3.1e-230 801.6 449 83.3
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 1.6e-229 799.3 443 83.1
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 1.6e-229 799.3 451 82.3
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.6e-229 799.3 453 80.4
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.7e-229 798.5 447 82.6
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 2.7e-229 798.5 449 82.0
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 3.5e-229 798.1 453 81.0
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 7.7e-229 797.0 448 81.5
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.0e-228 796.6 452 81.2
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 1.0e-228 796.6 449 82.0
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 1.3e-228 796.2 448 83.0
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.3e-228 796.2 453 80.4
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.7e-228 795.8 447 82.3
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.7e-228 795.8 449 81.7
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 3.8e-228 794.7 448 82.8
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 3.8e-228 794.7 448 82.8
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.1e-227 793.1 453 81.2
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.1e-227 793.1 453 81.2
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 4.2e-227 791.2 453 81.5
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 5.5e-227 790.8 448 81.5
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 5.5e-227 790.8 453 81.0
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 7.2e-227 790.4 451 81.4
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 9.4e-227 790.0 451 81.4
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 9.4e-227 790.0 453 80.4
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 9.4e-227 790.0 451 80.9
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 1.2e-226 789.6 453 80.8
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.2e-226 789.6 453 79.9
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 2.1e-226 788.9 448 81.0
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 3.6e-226 788.1 449 81.3
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 6.1e-226 787.3 452 81.2
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.8e-225 785.8 447 81.4
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.8e-225 785.8 451 80.3
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 1.8e-225 785.8 447 82.3
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.3e-225 785.4 451 80.7
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.0e-225 784.6 449 79.7
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 6.8e-225 783.9 451 79.4
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.2e-224 783.1 451 80.9
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 2.0e-224 782.3 451 79.8
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 2.0e-224 782.3 453 79.9
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 4.4e-224 781.2 430 84.4
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 7.5e-224 780.4 449 80.6
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 7.5e-224 780.4 449 79.7
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 2.2e-223 778.9 448 79.7
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.4e-222 776.2 452 80.1
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 2.4e-222 775.4 453 79.2
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 4.1e-222 774.6 453 79.2
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 9.1e-222 773.5 451 78.5
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 7.7e-221 770.4 451 79.6
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 2.3e-220 768.8 453 79.2
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 2.3e-220 768.8 471 76.4
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 4.2e-219 764.6 495 74.3
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 5.5e-219 764.2 443 79.9
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 9.5e-219 763.5 440 79.3
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 1.2e-218 763.1 451 77.6
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.6e-218 762.7 447 78.1
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 2.1e-218 762.3 452 77.9
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 3.6e-218 761.5 446 79.6
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 1.4e-217 759.6 447 79.4
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 7.5e-216 753.8 433 79.2
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 2.3e-212 742.3 412 83.0
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 2.3e-212 742.3 449 75.3
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 3.8e-212 741.5 447 78.1
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 8.6e-212 740.3 449 75.5
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 5.2e-209 731.1 451 74.9
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 6.4e-207 724.2 448 76.3
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 5.6e-203 711.1 453 74.0
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 1.3e-199 699.9 448 72.5
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 6.0e-197 691.0 446 71.3
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 2.5e-195 685.6 379 83.6
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 8.1e-194 680.6 457 71.8
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 8.9e-193 677.2 388 79.4
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.8e-192 674.5 447 72.3
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 8.3e-191 670.6 464 70.7
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 7.1e-190 667.5 376 79.5
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 1.6e-189 666.4 452 68.4
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.5e-171 605.9 452 66.2
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 7.3e-171 604.4 334 84.4
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.6e-168 595.9 456 66.0
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.5e-160 570.1 432 65.3
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 9.3e-150 534.3 298 84.2
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 6.0e-149 531.6 295 83.7
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.8e-146 522.7 451 59.6
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.1e-142 510.8 316 73.4
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 2.4e-137 493.0 288 77.4
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.0e-127 461.1 379 59.4
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.0e-124 451.1 445 53.9
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.2e-116 422.2 295 65.8
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.8e-101 373.2 280 63.6
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 8.3e-82 308.5 200 68.5
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 2.2e-74 283.9 162 80.9
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.9e-66 256.9 276 47.8
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 1.1e-65 255.0 153 72.5
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 7.1e-65 252.3 198 66.7
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 7.1e-65 252.3 145 77.9
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 3.5e-64 250.0 140 81.4
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.3e-63 248.1 147 77.6
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 2.3e-63 247.3 147 75.5
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.1e-61 240.7 153 67.3
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.8e-59 232.6 156 67.3
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.1e-54 218.4 135 78.5
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 4.3e-46 189.9 138 63.8
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 8.1e-45 185.7 111 80.2
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.2e-35 155.2 117 60.7
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 3.4e-35 153.7 132 56.1
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 4.6e-24 116.7 55 94.5
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 9.7e-22 109.0 68 70.6
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.6e-19 100.9 78 59.0
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.3e-18 98.6 73 60.3
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 8.5e-18 95.9 73 58.9
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.6e-16 91.7 67 59.7
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 1.4e-15 88.6 65 60.0
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 2.3e-15 87.8 83 53.0
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 6.7e-15 86.3 67 58.2
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 1.3e-13 82.0 80 48.8
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 1.1e-12 79.0 49 67.3
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.2e-11 75.5 50 68.0
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 2.9e-10 70.9 41 73.2
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 4.2e-09 67.0 65 47.7
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 1.2e-08 65.5 169 28.4
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 8.0e-08 62.8 35 77.1


User provided reference genes

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