Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p01070 Brassica napus HOM05D004950 ORTHO05D004838 2.5e-240 835.5 587 100.0
BolC1t00104H Brassica oleracea HOM05D004950 ORTHO05D004838 7.9e-234 813.9 588 95.7
BraA01t00092Z Brassica rapa HOM05D004950 ORTHO05D004838 8.2e-231 803.9 588 97.1
A01p00940 Brassica napus HOM05D004950 ORTHO05D004838 6.9e-230 800.8 588 96.8
Sp7g35850 Schrenkiella parvula HOM05D004950 ORTHO05D004838 2.3e-188 662.9 628 76.4
BcaNung00933 Brassica carinata HOM05D004950 ORTHO05D004838 9.5e-187 657.5 588 83.3
CARHR246650 Cardamine hirsuta HOM05D004950 ORTHO05D004838 7.3e-163 578.2 613 71.8
AL7G12330 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 9.5e-163 577.8 610 72.1
AT4G40020 Arabidopsis thaliana HOM05D004950 ORTHO05D004838 5.2e-153 545.4 606 69.5
Thhalv10027577m.g Eutrema salsugineum HOM05D004950 ORTHO05D004838 1.1e-147 527.7 624 70.2
Carub.0007s0199 Capsella rubella HOM05D004950 ORTHO05D004838 7.6e-136 488.4 602 66.8
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 4.5e-88 329.7 571 47.1
A09p21730 Brassica napus HOM05D004950 ORTHO05D004838 3.5e-72 276.9 322 55.9
Aa31LG6G15210 Aethionema arabicum HOM05D004950 ORTHO05D004838 1.5e-70 271.6 582 43.6
THA.LOC104824888 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 1.8e-68 264.6 587 47.0
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 9.8e-67 258.8 249 60.6
C04p34940 Brassica napus HOM05D004950 ORTHO05D004838 3.1e-60 237.3 193 71.0
BolC4t25048H Brassica oleracea HOM05D004950 ORTHO05D004838 3.1e-60 237.3 193 71.0
BcaB02g10025 Brassica carinata HOM05D004950 ORTHO05D032427 3.4e-59 233.8 193 72.5
BcaNung00932 Brassica carinata HOM05D004950 ORTHO05D004838 1.8e-52 211.5 146 91.8
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 7.6e-43 179.5 344 37.2
TWI53G1075 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 2.7e-40 171.0 323 44.3
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 2.5e-38 164.5 592 28.2
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 3.6e-37 160.6 656 30.3
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 8.1e-37 159.5 356 38.2
Lj2C540T9 Lonicera japonica HOM05D004950 ORTHO05D004838 1.8e-36 158.3 360 40.6
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 7.6e-35 152.9 541 29.8
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 1.7e-34 151.8 537 28.1
TWI74G0620 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 1.7e-34 151.8 322 42.9
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 2.2e-34 151.4 538 32.9
Eucgr.H04743 Eucalyptus grandis HOM05D004950 ORTHO05D004838 1.1e-33 149.1 358 33.0
EL10As13g24047 Beta vulgaris HOM05D004950 ORTHO05D004838 2.4e-33 147.9 336 35.7
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 1.6e-32 145.2 543 31.5
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 1.6e-32 145.2 535 28.8
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 1.7e-31 141.7 553 32.7
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 2.3e-31 141.4 547 29.6
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 3.9e-31 140.6 571 29.4
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 8.7e-31 139.4 535 36.8
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 4.3e-30 137.1 552 28.8
PSO302G0004 Papaver somniferum HOM05D004950 ORTHO05D004838 3.6e-29 134.0 350 32.3
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 4.8e-29 133.7 345 32.8
PSO675G9110 Papaver somniferum HOM05D004950 ORTHO05D004838 6.2e-29 133.3 339 32.4
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 8.1e-29 132.9 386 33.2
MSTRG.3758 Avicennia marina HOM05D004950 ORTHO05D004838 1.8e-28 131.7 345 33.0
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 2.4e-28 131.3 390 32.6
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 5.3e-28 130.2 542 36.3
ClCG07G017420 Citrullus lanatus HOM05D004950 ORTHO05D004838 6.9e-28 129.8 339 37.5
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 1.2e-27 129.0 551 27.4
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 4.5e-27 127.1 558 30.1
PSO541G5545 Papaver somniferum HOM05D004950 ORTHO05D004838 5.8e-27 126.7 339 32.2
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 9.9e-27 125.9 185 44.9
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 9.9e-27 125.9 145 48.3
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 6.4e-26 123.2 614 27.2
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 8.4e-26 122.9 305 33.1
unitig_748.g8651 Utricularia gibba HOM05D004950 ORTHO05D004838 1.1e-25 122.5 342 32.5
RcHm_v2.0_Chr2g0112431 Rosa chinensis HOM05D004950 ORTHO05D004838 1.9e-25 121.7 534 38.8
Sabra05G0059200 Salix brachista HOM05D004950 ORTHO05D004838 1.9e-25 121.7 339 33.0
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 5.4e-25 120.2 541 30.9
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 7.1e-25 119.8 151 50.3
CANSAT01G1426 Cannabis sativa HOM05D004950 ORTHO05D004838 2.1e-24 118.2 360 31.4
Potri.007G096600 Populus trichocarpa HOM05D004950 ORTHO05D004838 3.5e-24 117.5 338 34.9
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 4.6e-24 117.1 547 26.9
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 4.6e-24 117.1 198 40.9
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 1.8e-23 115.2 397 35.5
CsaV3_UNG223520 Cucumis sativus L. HOM05D004950 ORTHO05D004838 2.3e-23 114.8 164 45.7
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 3.0e-23 114.4 136 50.7
HanXRQChr14g0445041 Helianthus annuus HOM05D004950 ORTHO05D004838 3.9e-23 114.0 130 50.0
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 5.1e-23 113.6 561 30.8
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 1.5e-22 112.1 375 29.1
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 1.5e-22 112.1 637 25.4
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.9e-22 111.7 506 30.2
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.9e-22 111.7 506 30.2
FAN23G1536 Fragaria x ananassa HOM05D004950 ORTHO05D004838 7.4e-22 109.8 369 36.0
Migut.L00159 Erythranthe guttata HOM05D004950 ORTHO05D004838 1.6e-21 108.6 335 34.0
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 3.7e-21 107.5 536 25.0
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 4.8e-21 107.1 561 25.3
Cc07_g14660 Coffea canephora HOM05D004950 ORTHO05D004838 6.2e-21 106.7 338 28.4
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 6.2e-21 106.7 541 26.8
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 6.2e-21 106.7 560 25.9
Dinv08856 Davidia involucrata HOM05D004950 ORTHO05D004838 1.1e-20 105.9 351 31.1
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 1.1e-20 105.9 395 28.1
FAN26G1097 Fragaria x ananassa HOM05D000001 ORTHO05D004838 1.8e-20 105.1 369 35.8
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 2.4e-20 104.8 392 26.8
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 2.4e-20 104.8 359 30.4
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 6.9e-20 103.2 309 31.7
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 9.0e-20 102.8 533 24.0
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 1.2e-19 102.4 392 28.8
CAN.G33.13 Capsicum annuum HOM05D004950 ORTHO05D004838 3.4e-19 100.9 105 52.4
Peaxi162Scf00569g00049 Petunia axillaris HOM05D004950 ORTHO05D004838 7.6e-19 99.8 96 55.2
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 2.2e-18 98.2 590 25.8
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 2.9e-18 97.8 540 25.4
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 4.9e-18 97.1 273 31.9
CSS0021212 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 1.4e-17 95.5 451 27.1
Nn1g05445 Nelumbo nucifera HOM05D004950 ORTHO05D004838 2.4e-17 94.7 123 46.3
Zm00001eb401420 Zea mays HOM05D004950 ORTHO05D004838 5.5e-17 93.6 356 30.3
Thecc.01G096300 Theobroma cacao HOM05D004950 ORTHO05D004838 7.1e-17 93.2 566 29.2
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 9.3e-17 92.8 549 24.6
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 1.2e-16 92.4 146 40.4
Sed0023595 Sechium edule HOM05D004950 ORTHO05D004838 2.1e-16 91.7 333 41.1
MBI02_g33232_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004838 7.9e-16 89.7 351 27.1
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 1.3e-15 89.0 373 27.1
Zm00001eb006740 Zea mays HOM05D004950 ORTHO05D004838 1.3e-15 89.0 350 29.4
Sed0005265 Sechium edule HOM05D004950 ORTHO05D004838 2.3e-15 88.2 331 30.8
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 3.0e-15 87.8 419 28.4
GSVIVG01003422001 Vitis vinifera HOM05D000001 ORTHO05D000003 5.1e-15 87.0 604 24.3
Potri.005G072400 Populus trichocarpa HOM05D004950 ORTHO05D004838 1.1e-14 85.9 570 30.9
SalBow5G3597 Salvia bowleyana HOM05D004950 ORTHO05D004838 1.5e-14 85.5 139 41.0
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 1.9e-14 85.1 572 30.2
Aqoxy6G00721 Aquilegia oxysepala HOM05D004950 ORTHO05D004838 4.3e-14 84.0 391 24.0
unitig_32.g11809 Utricularia gibba HOM05D004950 ORTHO05D004838 4.3e-14 84.0 342 28.7
Phvul.001G253600 Phaseolus vulgaris HOM05D004950 ORTHO05D004838 9.6e-14 82.8 555 26.1
Potri.013G079000 Populus trichocarpa HOM05D002657 ORTHO05D003059 9.6e-14 82.8 198 33.3
HanXRQChr10g0314761 Helianthus annuus HOM05D004950 ORTHO05D004838 1.3e-13 82.4 124 39.5
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 1.3e-13 82.4 565 24.2
Duzib147G1409 Durio zibethinus HOM05D004950 ORTHO05D004838 1.6e-13 82.0 328 25.9
VMungo1383G3674 Vigna mungo HOM05D004950 ORTHO05D004838 1.4e-12 79.0 594 22.9
AL7G13610 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 2.4e-12 78.2 124 51.6
Dinv29136 Davidia involucrata HOM05D002657 ORTHO05D003059 3.1e-12 77.8 157 33.8
TWI60G0601 Tripterygium wilfordii HOM05D002657 ORTHO05D003059 3.4e-11 74.3 400 24.8
Solyc06g072730.4 Solanum lycopersicum HOM05D002657 ORTHO05D003059 5.8e-11 73.6 182 31.9
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 5.8e-11 73.6 151 37.1
Duzib264G0159 Durio zibethinus HOM05D004950 ORTHO05D004838 7.6e-11 73.2 548 23.7
Zm00001eb199080 Zea mays HOM05D004950 ORTHO05D004838 1.3e-10 72.4 316 25.0
Gorai.007G059800 Gossypium raimondii HOM05D004950 ORTHO05D004838 1.7e-10 72.0 552 31.0
Haze_00384 Corylus avellana HOM05D002657 ORTHO05D003059 2.2e-10 71.6 157 33.1
Sopen05g029920 Solanum pennellii HOM05D004950 ORTHO05D004838 2.9e-10 71.2 91 49.5
Zm00001eb081260 Zea mays HOM05D020839 ORTHO05D004838 3.8e-10 70.9 308 24.4
Ah.03g142010 Amaranthus hybridus HOM05D004950 ORTHO05D004838 4.9e-10 70.5 380 25.8
Cc01_g00970 Coffea canephora HOM05D002657 ORTHO05D003059 4.9e-10 70.5 168 30.4
Nitab4.5_0006824g0010 Nicotiana tabacum HOM05D004950 ORTHO05D004838 6.5e-10 70.1 128 37.5
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 8.4e-10 69.7 351 28.2
Sp6g27420 Schrenkiella parvula HOM05D002657 ORTHO05D003059 8.4e-10 69.7 203 32.5
Nitab4.5_0001874g0100 Nicotiana tabacum HOM05D004950 ORTHO05D004838 1.9e-09 68.6 292 30.8
Thhalv10012674m.g Eutrema salsugineum HOM05D002657 ORTHO05D003059 5.5e-09 67.0 200 30.0
BolC2t08249H Brassica oleracea HOM05D002657 ORTHO05D003059 7.1e-09 66.6 151 36.4
HanXRQChr17g0546381 Helianthus annuus HOM05D004950 ORTHO05D004838 7.1e-09 66.6 74 48.6
Os03g0189300 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 1.2e-08 65.9 348 27.0
Nitab4.5_0000128g0260 Nicotiana tabacum HOM05D000288 ORTHO05D004838 1.6e-08 65.5 82 50.0
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 1.6e-08 65.5 238 28.6
HPP92_027242 Vanilla planifolia HOM05D004950 ORTHO05D004838 1.6e-08 65.5 114 41.2
Gohir.D11G219100 Gossypium hirsutum HOM05D004950 ORTHO05D004838 2.7e-08 64.7 323 25.1
Gorai.007G348400 Gossypium raimondii HOM05D002657 ORTHO05D003059 2.7e-08 64.7 207 29.5
PSO063G0986 Papaver somniferum HOM05D002657 ORTHO05D003059 3.5e-08 64.3 357 25.2
CARHR076960 Cardamine hirsuta HOM05D002657 ORTHO05D003059 4.6e-08 63.9 199 28.1
CDE10G1352 Ceratophyllum demersum HOM05D004950 ORTHO05D004838 1.0e-07 62.8 362 26.2
Nitab4.5_0000241g0210 Nicotiana tabacum HOM05D000288 ORTHO05D004838 1.0e-07 62.8 135 34.1
Sopen06g029110 Solanum pennellii HOM05D002657 ORTHO05D003059 1.3e-07 62.4 139 30.9
CARHR196450 Cardamine hirsuta HOM05D002657 ORTHO05D003059 1.8e-07 62.0 202 29.7
Actinidia08759 Actinidia chinensis HOM05D002657 ORTHO05D003059 2.3e-07 61.6 160 28.8
Carub.0003s0206 Capsella rubella HOM05D002657 ORTHO05D003059 3.0e-07 61.2 185 27.6
PGSC0003DMG400046241 Solanum tuberosum HOM05D004950 ORTHO05D004838 5.1e-07 60.5 90 40.0
HanXRQChr14g0445051 Helianthus annuus HOM05D004950 ORTHO05D004838 6.7e-07 60.1 92 38.0
AL3G12390 Arabidopsis lyrata HOM05D002657 ORTHO05D003059 8.7e-07 59.7 206 28.2
Rhsim10G0167200 Rhododendron simsii HOM05D004950 ORTHO05D004838 8.7e-07 59.7 60 55.0
BolC3t13410H Brassica oleracea HOM05D002657 ORTHO05D003059 1.1e-06 59.3 178 27.5
Sed0022201 Sechium edule HOM05D002657 ORTHO05D003059 1.1e-06 59.3 171 28.7
Gohir.D03G040150 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.5e-06 58.9 108 38.9
Os04g0450900 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 1.5e-06 58.9 331 24.2
A03p07920 Brassica napus HOM05D002657 ORTHO05D003059 1.9e-06 58.5 174 27.6
Gohir.A02G129300 Gossypium hirsutum HOM05D004950 ORTHO05D004838 2.5e-06 58.2 567 23.1
Os10g0577100 Oryza sativa ssp. japonica HOM05D002657 ORTHO05D003059 2.5e-06 58.2 164 31.7
HPP92_020910 Vanilla planifolia HOM05D002657 ORTHO05D003059 2.5e-06 58.2 182 28.6
C02p21090 Brassica napus HOM05D002657 ORTHO05D003059 3.3e-06 57.8 331 23.9
Carub.0007s1326 Capsella rubella HOM05D002657 ORTHO05D003059 4.3e-06 57.4 180 27.2
Sed0014338 Sechium edule HOM05D002657 ORTHO05D003059 4.3e-06 57.4 164 31.7
TAR374G0884 Trochodendron aralioides HOM05D002657 ORTHO05D003059 4.3e-06 57.4 198 28.3
AT3G02930 Arabidopsis thaliana HOM05D002657 ORTHO05D003059 5.7e-06 57.0 206 28.2
BraA03t10117Z Brassica rapa HOM05D002657 ORTHO05D003059 5.7e-06 57.0 174 27.6
CDE06G2095 Ceratophyllum demersum HOM05D002657 ORTHO05D003059 5.7e-06 57.0 162 29.0
Gohir.A11G204800 Gossypium hirsutum HOM05D004950 ORTHO05D004838 5.7e-06 57.0 538 25.7
TAR375G0807 Trochodendron aralioides HOM05D002657 ORTHO05D003059 5.7e-06 57.0 184 29.9
Nitab4.5_0010702g0020 Nicotiana tabacum HOM05D000288 ORTHO05D000173 7.4e-06 56.6 68 48.5
Oeu038085.1 Olea europaea HOM05D002657 ORTHO05D003059 7.4e-06 56.6 198 27.3
CSS0006811 Camellia sinensis var. sinensis HOM05D002657 ORTHO05D003059 9.7e-06 56.2 182 28.0
Gohir.A10G085000 Gossypium hirsutum HOM05D004950 ORTHO05D004838 9.7e-06 56.2 291 31.3
PSO782G1876 Papaver somniferum HOM05D002657 ORTHO05D003059 9.7e-06 56.2 198 28.8


User provided reference genes

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