Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 8.4e-94 347.1 181 100.0
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 8.4e-94 347.1 181 100.0
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 5.5e-93 344.4 181 99.4
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 7.2e-85 317.4 181 92.3
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 9.4e-85 317.0 181 91.7
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 3.6e-84 315.1 181 92.3
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 1.5e-82 309.7 181 90.6
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 1.4e-80 303.1 181 86.7
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 4.1e-80 301.6 181 86.7
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 5.3e-80 301.2 181 87.3
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 6.9e-80 300.8 182 86.8
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 3.4e-79 298.5 181 85.6
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 3.6e-76 288.5 177 84.7
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 3.6e-76 288.5 177 84.7
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 7.9e-76 287.3 182 83.0
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.8e-75 286.2 182 84.1
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 1.3e-73 280.0 180 82.8
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 3.3e-66 255.4 182 78.0
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 7.0e-64 247.7 178 77.5
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.1e-60 236.1 188 71.3
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 4.7e-60 235.0 176 72.2
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 8.5e-54 214.2 181 68.0
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.1e-53 213.8 180 68.3
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.5e-53 213.4 180 68.3
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 3.2e-53 212.2 179 64.8
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 5.5e-53 211.5 178 66.3
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 9.4e-53 210.7 186 67.7
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 1.2e-52 210.3 180 65.6
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 2.7e-52 209.1 182 63.7
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 2.7e-52 209.1 187 65.2
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 4.7e-52 208.4 181 64.6
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.1e-52 208.0 179 67.0
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 6.1e-52 208.0 185 64.9
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 6.1e-52 208.0 185 64.9
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 8.0e-52 207.6 188 65.4
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 8.0e-52 207.6 178 66.9
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.0e-51 207.2 177 67.2
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.0e-51 207.2 177 67.2
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 1.0e-51 207.2 182 63.2
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 4.0e-51 205.3 179 65.9
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 4.0e-51 205.3 181 63.0
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.0e-51 205.3 179 64.8
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 6.8e-51 204.5 188 61.7
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 6.8e-51 204.5 180 61.1
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 8.8e-51 204.1 180 64.4
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 1.5e-50 203.4 181 63.5
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 1.5e-50 203.4 179 63.1
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.5e-50 203.4 186 63.4
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.6e-50 202.6 182 62.1
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 3.4e-50 202.2 178 67.4
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 7.5e-50 201.1 178 64.0
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.7e-49 199.9 193 62.2
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 1.7e-49 199.9 186 61.3
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 1.7e-49 199.9 184 63.6
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.2e-49 199.5 178 62.4
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 2.2e-49 199.5 201 60.2
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.8e-49 199.1 178 62.4
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 2.8e-49 199.1 178 64.6
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 3.7e-49 198.7 180 66.1
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 4.8e-49 198.4 178 62.4
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 4.8e-49 198.4 184 63.6
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 6.3e-49 198.0 179 61.5
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 6.3e-49 198.0 178 62.4
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.3e-49 198.0 180 63.9
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.3e-49 198.0 180 63.9
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 6.3e-49 198.0 178 61.8
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 8.3e-49 197.6 182 62.6
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 8.3e-49 197.6 178 62.4
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 8.3e-49 197.6 180 63.9
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 8.3e-49 197.6 199 59.3
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 1.8e-48 196.4 184 62.5
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.8e-48 196.4 181 61.9
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.4e-48 196.1 181 61.9
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 3.1e-48 195.7 179 62.0
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 4.1e-48 195.3 175 65.1
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 5.4e-48 194.9 183 61.2
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 7.0e-48 194.5 179 63.1
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 9.1e-48 194.1 185 62.2
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 1.2e-47 193.7 198 59.6
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.0e-47 193.0 178 62.9
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 5.9e-47 191.4 178 61.2
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.9e-47 191.4 181 60.8
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 7.7e-47 191.0 188 60.6
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.0e-46 190.7 179 62.6
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.0e-46 190.7 184 60.3
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 1.0e-46 190.7 174 62.1
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.3e-46 189.5 181 60.2
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 2.3e-46 189.5 184 59.8
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 2.9e-46 189.1 191 58.6
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 2.9e-46 189.1 181 60.2
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 3.8e-46 188.7 131 74.0
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 5.0e-46 188.3 204 55.4
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 8.6e-46 187.6 182 59.3
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 1.1e-45 187.2 184 60.3
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.1e-45 187.2 177 59.9
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 3.3e-45 185.7 180 58.3
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 5.5e-45 184.9 177 61.0
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 7.2e-45 184.5 189 56.6
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 9.5e-45 184.1 153 65.4
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 2.1e-44 183.0 177 58.2
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.1e-44 181.4 182 61.0
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.4e-43 180.3 183 56.3
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 1.4e-43 180.3 181 57.5
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 4.0e-43 178.7 193 58.5
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 5.2e-43 178.3 145 66.9
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 2.0e-42 176.4 190 55.8
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.3e-41 173.7 110 76.4
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 4.9e-41 171.8 177 52.5
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 6.3e-41 171.4 190 57.4
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.4e-40 168.3 181 57.5
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 7.0e-40 167.9 180 55.6
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 3.5e-39 165.6 176 58.0
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 8.6e-38 161.0 159 60.4
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 5.6e-37 158.3 163 57.7
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 5.6e-37 158.3 130 58.5
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.4e-35 153.7 180 56.7
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.8e-35 153.3 193 49.7
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 2.6e-34 149.4 145 62.1
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 5.8e-34 148.3 90 81.1
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 8.3e-33 144.4 106 67.0
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.1e-32 144.1 142 62.7
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.4e-32 143.7 189 46.0
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.2e-28 130.6 127 61.4
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 1.4e-27 127.1 117 59.8
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.4e-27 127.1 114 57.9
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 3.1e-27 125.9 108 59.3
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.2e-26 124.0 121 55.4
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 4.4e-26 122.1 101 61.4
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 9.8e-26 120.9 126 54.8
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 9.8e-26 120.9 101 60.4
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 4.9e-25 118.6 96 66.7
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 1.9e-24 116.7 105 58.1
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 4.1e-24 115.5 104 57.7
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 1.5e-21 107.1 110 50.0
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 1.9e-21 106.7 104 54.8
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 5.6e-21 105.1 110 53.6
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 5.6e-21 105.1 176 41.5
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 5.6e-21 105.1 131 52.7
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.8e-20 102.8 104 50.0
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.2e-20 101.7 88 67.0
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 1.1e-19 100.9 106 51.9
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.8e-19 100.1 82 58.5
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 8.9e-19 97.8 96 50.0
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 1.3e-17 94.0 80 56.2
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 3.7e-17 92.4 69 63.8
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 8.3e-17 91.3 64 73.4
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.4e-16 89.7 67 70.1
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 6.0e-15 85.1 113 41.6
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 2.3e-14 83.2 81 54.3
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 5.1e-14 82.0 142 43.7
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.6e-12 77.0 94 44.7
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 6.2e-12 75.1 138 34.8
AL1G34190 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 2.2e-09 66.6 123 43.1
AL8G34840 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 2.9e-09 66.2 123 43.1
AL1G23700 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 3.8e-09 65.9 74 58.1
AL855U10020 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 3.8e-09 65.9 74 58.1
BraA02t04844Z Brassica rapa HOM05D017491 ORTHO05D005185 7.1e-08 61.6 77 50.6
AL8G33300 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 9.3e-08 61.2 54 63.0
AL1G53010 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 1.0e-06 57.8 60 60.0


User provided reference genes

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