Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.1e-203 713.4 443 100.0
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 2.1e-194 682.6 461 91.8
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 2.7e-194 682.2 461 92.0
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 4.6e-194 681.4 443 95.7
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 9.3e-187 657.1 461 90.2
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 8.0e-162 574.3 453 82.3
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 3.8e-156 555.4 461 79.8
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 3.6e-154 548.9 453 79.7
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 3.4e-144 515.8 453 78.6
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 3.4e-144 515.8 453 78.6
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 5.7e-144 515.0 459 75.8
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.7e-143 513.5 469 74.4
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 3.8e-140 502.3 419 80.2
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 2.5e-139 499.6 469 75.3
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 4.0e-137 492.3 462 74.7
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 1.7e-135 486.9 458 70.5
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 1.4e-134 483.8 460 72.6
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 9.8e-120 434.5 481 65.7
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 4.1e-118 429.1 457 63.0
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 9.6e-107 391.3 256 77.7
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.2e-106 391.0 457 60.6
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 2.1e-106 390.2 329 72.6
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 2.8e-106 389.8 488 56.4
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 6.2e-106 388.7 458 59.6
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 4.0e-105 386.0 458 59.4
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 9.9e-104 381.3 253 75.1
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 2.2e-103 380.2 366 60.4
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 2.2e-103 380.2 238 79.8
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.2e-103 380.2 458 60.5
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.9e-103 379.0 264 73.9
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 4.9e-103 379.0 481 56.1
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 1.4e-102 377.5 257 73.5
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 1.9e-102 377.1 254 74.8
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 9.3e-102 374.8 246 76.4
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 9.3e-102 374.8 270 70.7
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 2.7e-101 373.2 251 74.5
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 4.6e-101 372.5 251 73.7
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 6.0e-101 372.1 241 76.3
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.3e-100 370.9 260 72.7
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.7e-100 370.5 275 70.5
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.3e-100 370.2 451 53.9
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 3.0e-100 369.8 241 76.3
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.9e-99 367.1 254 73.2
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 2.5e-99 366.7 251 72.5
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 7.3e-99 365.2 270 71.5
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 9.6e-99 364.8 255 74.1
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.6e-98 364.0 467 55.2
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.6e-98 364.0 480 53.8
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 1.6e-98 364.0 480 51.0
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 2.1e-98 363.6 256 71.5
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.1e-98 363.6 244 74.2
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 8.1e-98 361.7 242 74.0
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.1e-97 361.3 360 66.9
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.8e-97 360.5 242 73.6
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 6.9e-97 358.6 254 71.3
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 9.0e-97 358.2 444 51.1
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 9.0e-97 358.2 261 72.4
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.2e-96 357.8 358 58.9
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 1.2e-96 357.8 474 53.8
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 2.0e-96 357.1 446 56.5
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 2.6e-96 356.7 482 53.7
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 5.8e-96 355.5 488 53.5
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 5.8e-96 355.5 471 52.2
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 3.8e-95 352.8 494 49.2
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 4.9e-95 352.4 486 50.2
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 1.1e-94 351.3 239 74.5
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 1.1e-94 351.3 259 69.5
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.4e-94 350.9 371 57.4
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 7.1e-94 348.6 255 67.8
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.2e-93 347.8 464 49.8
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 1.6e-93 347.4 469 53.3
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 6.0e-93 345.5 373 54.2
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 6.0e-93 345.5 245 70.6
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 7.8e-93 345.1 253 71.1
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 1.3e-92 344.4 454 54.4
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.0e-92 343.2 253 70.0
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 3.0e-92 343.2 472 52.5
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 3.0e-92 343.2 360 56.9
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 3.9e-92 342.8 245 71.8
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 8.7e-92 341.7 479 47.0
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 8.7e-92 341.7 251 70.1
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.1e-91 341.3 458 56.8
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 2.5e-91 340.1 369 59.3
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 5.6e-91 339.0 475 47.4
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.6e-90 337.4 466 53.6
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 8.1e-90 335.1 253 68.0
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.1e-89 333.2 245 68.6
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 5.3e-89 332.4 260 64.6
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 6.9e-89 332.0 487 51.3
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 9.0e-89 331.6 343 60.9
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.2e-88 331.3 244 67.6
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.5e-88 330.9 231 70.6
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 3.4e-88 329.7 473 53.9
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 2.9e-87 326.6 490 47.1
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 8.4e-87 325.1 330 59.7
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.4e-86 324.3 348 55.7
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.4e-86 323.6 256 66.0
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 2.4e-86 323.6 256 66.0
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 5.4e-86 322.4 260 63.8
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 5.4e-86 322.4 244 66.8
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 9.3e-86 321.6 385 51.7
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 2.1e-85 320.5 237 67.5
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 1.0e-84 318.2 247 66.8
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 1.3e-84 317.8 262 62.6
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 2.3e-84 317.0 233 68.7
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 8.7e-84 315.1 267 60.7
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 1.1e-81 308.1 394 49.2
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.4e-81 307.8 366 52.2
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 3.1e-81 306.6 254 61.8
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 8.4e-79 298.5 245 64.9
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 3.2e-78 296.6 336 55.4
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 7.9e-77 292.0 381 47.2
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 8.7e-76 288.5 470 50.2
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 5.7e-75 285.8 213 69.0
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 7.4e-75 285.4 352 48.0
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 5.3e-73 279.3 224 60.7
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 4.5e-72 276.2 247 58.7
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 6.3e-66 255.8 241 53.5
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.4e-54 218.0 261 46.7
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 1.1e-46 191.8 252 38.9
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 6.7e-44 182.6 248 43.1
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 2.0e-43 181.0 249 42.6
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 6.3e-42 176.0 111 76.6
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 7.0e-41 172.6 228 40.4
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 2.2e-39 167.5 250 39.6
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.9e-38 164.5 248 38.7
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 2.1e-37 161.0 89 82.0
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 1.5e-35 154.8 237 39.7
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 8.3e-34 149.1 131 53.4
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 2.4e-33 147.5 261 36.8
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.4e-28 131.7 243 32.5
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 5.2e-28 129.8 218 32.6
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 9.8e-27 125.6 226 36.7
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 3.5e-24 117.1 225 30.2
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 1.0e-23 115.5 241 30.3
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 2.9e-23 114.0 175 41.7
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 2.8e-21 107.5 220 35.0
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 5.2e-20 103.2 304 39.8
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 5.7e-19 99.8 75 58.7
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 2.8e-13 80.9 126 39.7
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 8.0e-13 79.3 131 36.6
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 4.0e-12 77.0 105 44.8
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 4.4e-11 73.6 211 29.4
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 4.4e-11 73.6 105 43.8
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 1.3e-10 72.0 108 41.7
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 8.3e-10 69.3 63 50.8
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 2.4e-09 67.8 54 50.0
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 3.2e-09 67.4 145 37.9
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 7.0e-09 66.2 43 55.8
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 1.0e-07 62.4 177 31.6
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 5.0e-07 60.1 134 31.3


User provided reference genes

Program Settings