Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 6229.8 3151 100.0
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 6157.4 3142 99.1
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 6042.2 3153 96.9
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 6027.6 3146 96.9
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 5491.8 3200 87.8
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 5488.7 3197 87.9
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 5423.2 3198 86.4
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 5418.6 3191 86.5
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 5385.5 3190 86.2
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 5244.5 3186 84.0
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 5080.0 3252 79.8
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 4462.5 3195 72.4
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3625.1 3267 59.5
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3605.8 3237 59.5
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3588.5 3222 59.5
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3576.6 3282 58.8
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3561.9 3261 58.6
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3538.0 3233 58.5
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3538.0 3245 58.4
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3535.7 3233 58.5
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3524.9 3243 58.7
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3521.5 3241 58.9
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3493.0 3292 58.0
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3490.7 3247 58.2
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3482.2 3226 58.8
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3478.7 3254 58.0
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3469.9 3253 57.5
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3457.5 3281 57.5
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3455.6 3258 57.4
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3434.8 3253 57.1
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3434.0 3257 57.0
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3432.9 3253 57.1
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3419.0 3255 57.5
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3411.3 3284 56.4
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3369.7 3202 57.0
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3357.4 3252 56.3
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3326.6 3230 55.9
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3325.0 3262 56.0
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3324.3 3230 56.1
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3318.1 3246 55.5
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3313.9 3232 55.9
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3312.7 3243 55.4
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3305.4 3234 55.8
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3298.1 3298 55.4
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3275.3 3224 55.7
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3268.4 3266 55.8
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3257.6 3228 55.3
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3219.9 3380 52.8
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3218.7 3224 55.2
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3211.0 3256 55.0
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3187.5 3274 54.0
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3184.0 3259 54.3
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3152.8 3273 53.2
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3152.1 2892 58.3
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3148.2 3277 53.5
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3139.4 3305 53.6
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3129.3 3273 53.2
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3123.6 3264 53.6
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3109.7 3174 53.8
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3108.9 3253 53.4
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3100.1 3259 53.2
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3093.5 3228 53.3
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3073.5 3062 54.1
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3070.8 3248 52.6
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3069.3 3229 53.6
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3058.1 3269 52.8
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3018.8 3252 51.9
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3010.3 3163 52.6
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3005.3 3274 51.5
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2874.7 2997 53.6
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2820.0 2701 56.6
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2743.4 2437 60.1
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2687.1 3075 50.6
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2679.4 3244 48.6
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2645.2 2988 50.9
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2627.4 3223 47.2
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2597.0 2020 66.9
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2381.7 3118 45.8
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2320.4 2454 52.0
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2137.1 2565 48.7
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2108.6 1602 69.1
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2070.4 1693 64.3
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2064.3 1993 56.8
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2026.9 3021 41.5
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1895.9 3279 38.1
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1888.2 1506 66.5
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1885.2 1467 67.6
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1866.3 2409 45.7
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1866.3 2726 42.3
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1837.4 3301 37.3
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1808.5 2435 44.6
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1777.3 1796 56.2
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1776.1 1443 65.8
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1728.8 2971 37.9
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1474.9 1005 75.1
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1394.0 2129 40.5
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1270.8 1246 55.3
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1211.1 1547 47.0
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1210.3 1721 41.6
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1190.3 1009 63.6
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1149.4 970 61.3
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1131.3 844 69.1
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1092.0 1519 42.6
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 7.3e-310 1068.9 833 67.0
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 7.6e-291 1005.7 3359 27.9
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.1e-288 997.7 950 58.4
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 3.3e-286 990.3 1134 52.0
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.7e-285 986.9 853 61.5
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 8.2e-261 906.0 1492 39.3
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 4.1e-260 903.7 885 54.1
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 9.1e-244 849.4 1500 37.3
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 2.2e-221 775.0 752 55.6
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 1.1e-217 762.7 1279 38.8
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 1.5e-198 699.1 414 84.8
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 4.6e-195 687.6 441 78.5
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 8.8e-146 523.9 803 39.2
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 2.6e-145 522.3 789 39.3
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 3.9e-138 498.4 683 43.9
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 6.1e-131 474.6 816 37.1
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 1.0e-130 473.8 902 34.1
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 3.5e-126 458.8 327 70.0
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 4.8e-120 438.3 250 85.2
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 4.8e-120 438.3 448 51.6
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 1.3e-117 430.3 270 78.9
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 1.3e-112 413.7 408 56.4
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-111 410.6 530 47.4
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 6.0e-102 378.3 786 32.6
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 1.3e-101 377.1 302 66.6
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 2.0e-97 363.2 803 32.1
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 9.2e-95 354.4 572 41.4
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 3.0e-93 349.4 815 33.3
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 1.8e-90 340.1 217 79.3
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 2.3e-90 339.7 244 68.4
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 8.9e-90 337.8 247 64.4
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-89 337.4 841 30.7
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-86 327.4 457 40.5
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 1.3e-85 323.9 337 55.2
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 4.3e-84 318.9 419 44.6
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 1.1e-82 314.3 819 30.0
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.6e-81 309.7 307 54.4
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 3.8e-80 305.8 354 48.9
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 2.1e-75 290.0 326 50.9
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 1.2e-73 284.3 734 30.2
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 1.2e-70 274.2 612 31.5
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 2.3e-69 270.0 687 30.0
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 5.1e-69 268.9 292 51.4
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.1e-67 263.5 962 26.1
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 2.1e-62 246.9 329 43.2
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 2.2e-56 226.9 155 71.6
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 2.3e-45 190.3 389 33.7
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.5e-41 177.6 734 24.9
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 1.0e-40 174.9 213 48.4
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 1.7e-32 147.5 118 65.3
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 1.3e-27 131.3 96 66.7
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 4.1e-26 126.3 82 73.2
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 8.5e-24 118.6 124 49.2
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 1.5e-20 107.8 85 62.4
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.5e-20 107.8 111 50.5
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 2.2e-19 104.0 109 52.3
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 3.7e-19 103.2 125 49.6
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.7e-19 103.2 135 48.1
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 2.4e-18 100.5 69 72.5
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.2e-17 98.2 133 48.1
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 4.7e-14 86.3 93 46.2
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 2.6e-12 80.5 60 60.0
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 3.4e-12 80.1 133 34.6
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 4.1e-10 73.2 62 56.5
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 1.6e-09 71.2 60 56.7
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 2.7e-09 70.5 50 72.0
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 1.9e-07 64.3 45 71.1


User provided reference genes

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