Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p00350 Brassica napus HOM05D004721 ORTHO05D005765 4.8e-61 237.7 121 100.0
BolC1t00041H Brassica oleracea HOM05D004721 ORTHO05D005765 4.8e-61 237.7 121 100.0
CARHR247630 Cardamine hirsuta HOM05D004721 ORTHO05D005765 5.2e-31 137.9 125 62.4
A01p00240 Brassica napus HOM05D004721 ORTHO05D005765 4.4e-30 134.8 125 60.8
BraA01t00031Z Brassica rapa HOM05D004721 ORTHO05D005765 4.4e-30 134.8 125 60.8
Sp7g36700 Schrenkiella parvula HOM05D004721 ORTHO05D005765 1.7e-29 132.9 125 60.0
BcaC01g00283 Brassica carinata HOM05D004721 ORTHO05D005765 2.2e-29 132.5 125 60.8
A08p23810 Brassica napus HOM05D004721 ORTHO05D005765 2.2e-29 132.5 125 60.8
C03p77610 Brassica napus HOM05D004721 ORTHO05D005765 2.2e-29 132.5 125 60.8
BolC3t20019H Brassica oleracea HOM05D004721 ORTHO05D005765 2.2e-29 132.5 125 60.8
Thhalv10025644m.g Eutrema salsugineum HOM05D004721 ORTHO05D005765 2.9e-29 132.1 125 60.0
BraA08t34333Z Brassica rapa HOM05D004721 ORTHO05D005765 4.9e-29 131.3 125 60.0
BcaB03g12244 Brassica carinata HOM05D004721 ORTHO05D005765 8.3e-29 130.6 125 60.0
Carub.0007s0100 Capsella rubella HOM05D004721 ORTHO05D005765 8.3e-29 130.6 125 59.2
AL7G11060 Arabidopsis lyrata HOM05D004721 ORTHO05D005765 1.8e-28 129.4 125 59.2
AT4G39120 Arabidopsis thaliana HOM05D004721 ORTHO05D005765 2.4e-28 129.0 125 59.2
CSS0042553 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 4.6e-27 124.8 125 56.8
Aa31LG6G16140 Aethionema arabicum HOM05D004721 ORTHO05D005765 5.9e-27 124.4 125 56.0
THA.LOC104807751 Tarenaya hassleriana HOM05D004721 ORTHO05D005765 6.6e-26 120.9 125 54.4
VMungo1309G2240 Vigna mungo HOM05D004721 ORTHO05D005765 4.3e-25 118.2 125 52.0
Dinv23488 Davidia involucrata HOM05D004721 ORTHO05D005765 5.6e-25 117.9 125 52.0
Phvul.009G005100 Phaseolus vulgaris HOM05D004721 ORTHO05D005765 5.6e-25 117.9 125 52.8
Glyma.04G009800 Glycine max HOM05D004721 ORTHO05D005765 7.3e-25 117.5 125 51.2
RcHm_v2.0_Chr6g0265981 Rosa chinensis HOM05D004721 ORTHO05D005765 7.3e-25 117.5 125 50.4
Aqoxy6G01195 Aquilegia oxysepala HOM05D004721 ORTHO05D005765 9.5e-25 117.1 125 51.2
Haze_02333 Corylus avellana HOM05D004721 ORTHO05D005765 9.5e-25 117.1 123 52.0
Lj5A193T104 Lonicera japonica HOM05D004721 ORTHO05D005765 9.5e-25 117.1 124 52.4
Gorai.005G246000 Gossypium raimondii HOM05D004721 ORTHO05D005765 1.2e-24 116.7 125 51.2
CiPaw.06G132800 Carya illinoinensis HOM05D004721 ORTHO05D005765 1.6e-24 116.3 125 50.4
Glyma.06G009800 Glycine max HOM05D004721 ORTHO05D005765 1.6e-24 116.3 126 50.8
Gohir.A03G196800 Gossypium hirsutum HOM05D004721 ORTHO05D005765 1.6e-24 116.3 125 50.4
GSVIVG01023826001 Vitis vinifera HOM05D004721 ORTHO05D005765 1.6e-24 116.3 125 51.2
CSS0047334 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 2.1e-24 115.9 125 51.2
CSS0049052 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 2.1e-24 115.9 125 51.2
Actinidia00549 Actinidia chinensis HOM05D004721 ORTHO05D005765 3.6e-24 115.2 125 50.4
Ciclev10028779m.g Citrus clementina HOM05D004721 ORTHO05D005765 3.6e-24 115.2 125 52.8
FvH4_2g09630 Fragaria vesca HOM05D004721 ORTHO05D005765 3.6e-24 115.2 125 49.6
FAN15G0894 Fragaria x ananassa HOM05D004721 ORTHO05D005765 3.6e-24 115.2 125 49.6
Gohir.D02G218100 Gossypium hirsutum HOM05D004721 ORTHO05D005765 3.6e-24 115.2 125 51.2
Peaxi162Scf00016g00435 Petunia axillaris HOM05D004721 ORTHO05D005765 3.6e-24 115.2 125 50.4
Prupe.8G090900 Prunus persica HOM05D004721 ORTHO05D005765 3.6e-24 115.2 125 50.4
Lalb_Chr08g0246691 Lupinus albus HOM05D004721 ORTHO05D005765 4.7e-24 114.8 125 51.2
TPR.G32188 Trifolium pratense HOM05D004721 ORTHO05D005765 4.7e-24 114.8 123 50.4
Migut.B00208 Erythranthe guttata HOM05D004721 ORTHO05D005765 6.2e-24 114.4 125 50.4
Eucgr.G01697 Eucalyptus grandis HOM05D004721 ORTHO05D005765 6.2e-24 114.4 125 50.4
MD05G1061200 Malus domestica HOM05D004721 ORTHO05D005765 6.2e-24 114.4 125 50.4
Psat5g005400 Pisum sativum HOM05D004721 ORTHO05D005765 6.2e-24 114.4 123 50.4
Rhsim11G0180400 Rhododendron simsii HOM05D004721 ORTHO05D005765 6.2e-24 114.4 125 51.2
Sabra09G0092900 Salix brachista HOM05D004721 ORTHO05D005765 6.2e-24 114.4 125 50.4
Lj1g0012947 Lotus japonicus HOM05D004721 ORTHO05D005765 8.0e-24 114.0 125 51.2
TAR628G0683 Trochodendron aralioides HOM05D004721 ORTHO05D005765 8.0e-24 114.0 125 50.4
Atru.chr5.3082 Acer truncatum HOM05D004721 ORTHO05D005765 1.0e-23 113.6 125 51.2
Ah.01g019120 Amaranthus hybridus HOM05D004721 ORTHO05D005765 1.0e-23 113.6 125 51.2
Cfa005049 Carpinus fangiana HOM05D004721 ORTHO05D005765 1.0e-23 113.6 123 49.6
FAN24G2181 Fragaria x ananassa HOM05D004721 ORTHO05D005765 1.0e-23 113.6 125 48.8
Nn5g28946 Nelumbo nucifera HOM05D004721 ORTHO05D005765 1.0e-23 113.6 125 50.4
arahy.Tifrunner.gnm1.ann1.0UP1AG Arachis hypogaea HOM05D004721 ORTHO05D005765 1.4e-23 113.2 125 49.6
arahy.Tifrunner.gnm1.ann1.IE0TZZ Arachis hypogaea HOM05D004721 ORTHO05D005765 1.4e-23 113.2 125 49.6
arahy.Tifrunner.gnm1.ann1.P63ZP0 Arachis hypogaea HOM05D004721 ORTHO05D005765 1.4e-23 113.2 125 49.6
arahy.Tifrunner.gnm1.ann1.VA1NMQ Arachis hypogaea HOM05D004721 ORTHO05D005765 1.4e-23 113.2 125 49.6
Cpa.g.sc106.2 Carica papaya HOM05D004721 ORTHO05D005765 1.4e-23 113.2 125 51.2
Nn5g29707 Nelumbo nucifera HOM05D004721 ORTHO05D005765 1.4e-23 113.2 125 49.6
Potri.009G120600 Populus trichocarpa HOM05D004721 ORTHO05D005765 1.4e-23 113.2 125 49.6
SalBow6G3984 Salvia bowleyana HOM05D004721 ORTHO05D005765 1.4e-23 113.2 125 49.6
Sc08g0000660 Simmondsia chinensis HOM05D004721 ORTHO05D005765 1.4e-23 113.2 124 50.8
ECA240G1659 Erigeron canadensis HOM05D004721 ORTHO05D005765 1.8e-23 112.8 125 48.8
Lj9A377G93 Lonicera japonica HOM05D004721 ORTHO05D005765 1.8e-23 112.8 125 50.4
TAR628G0727 Trochodendron aralioides HOM05D004721 ORTHO05D005765 1.8e-23 112.8 125 50.4
vmacro17459 Vaccinium macrocarpon HOM05D004721 ORTHO05D005765 1.8e-23 112.8 125 48.8
Duzib052G1174 Durio zibethinus HOM05D004721 ORTHO05D005765 2.3e-23 112.5 125 49.6
QL11p045210 Quercus lobata HOM05D004721 ORTHO05D005765 2.3e-23 112.5 124 49.2
MD10G1068900 Malus domestica HOM05D004721 ORTHO05D005765 3.1e-23 112.1 125 48.8
ClCG11G004130 Citrullus lanatus HOM05D004721 ORTHO05D005765 4.0e-23 111.7 123 48.8
HanXRQChr03g0069331 Helianthus annuus HOM05D004721 ORTHO05D005765 4.0e-23 111.7 125 50.4
Sopen01g052120 Solanum pennellii HOM05D004721 ORTHO05D005765 5.2e-23 111.3 125 48.0
EL10Ac9g21691 Beta vulgaris HOM05D004721 ORTHO05D005765 6.8e-23 110.9 125 49.6
PSO339G6113 Papaver somniferum HOM05D004721 ORTHO05D005765 6.8e-23 110.9 125 50.4
PGSC0003DMG400030950 Solanum tuberosum HOM05D004721 ORTHO05D005765 6.8e-23 110.9 125 48.8
TWI31G1285 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 6.8e-23 110.9 123 49.6
Solyc01g109930.4 Solanum lycopersicum HOM05D004721 ORTHO05D005765 8.9e-23 110.5 125 47.2
HPP92_022533 Vanilla planifolia HOM05D004721 ORTHO05D005765 8.9e-23 110.5 125 49.6
Manes.04G087050 Manihot esculenta HOM05D004721 ORTHO05D005765 1.2e-22 110.2 125 48.8
MELO3C023324.2 Cucumis melo HOM05D004721 ORTHO05D005765 1.5e-22 109.8 123 48.0
CsaV3_2G015040 Cucumis sativus L. HOM05D004721 ORTHO05D005765 1.5e-22 109.8 123 48.0
MBI10_g00756_MAGBIO Magnolia biondii HOM05D004721 ORTHO05D005765 2.6e-22 109.0 125 48.0
Oeu020727.1 Olea europaea HOM05D004721 ORTHO05D005765 2.6e-22 109.0 123 48.0
SGA_v2.0_scaffold32G13194 Striga asiatica HOM05D004721 ORTHO05D005765 2.6e-22 109.0 125 48.0
Thecc.02G080400 Theobroma cacao HOM05D004721 ORTHO05D005765 2.6e-22 109.0 125 49.6
Sed0009940 Sechium edule HOM05D004721 ORTHO05D005765 5.8e-22 107.8 123 48.0
Os07g0191000 Oryza sativa ssp. japonica HOM05D004721 ORTHO05D005765 7.5e-22 107.5 125 46.4
Nitab4.5_0005796g0050 Nicotiana tabacum HOM05D004721 ORTHO05D005765 9.8e-22 107.1 125 47.2
vmacro02078 Vaccinium macrocarpon HOM05D004721 ORTHO05D005765 9.8e-22 107.1 125 48.8
CANSAT11G2513 Cannabis sativa HOM05D004721 ORTHO05D005765 1.3e-21 106.7 125 48.8
Cfa005051 Carpinus fangiana HOM05D004721 ORTHO05D005765 1.3e-21 106.7 123 46.3
CDE07G1572 Ceratophyllum demersum HOM05D004721 ORTHO05D005765 1.3e-21 106.7 125 46.4
CAN.G1544.7 Capsicum annuum HOM05D004721 ORTHO05D005765 1.7e-21 106.3 125 47.2
AUR62011286 Chenopodium quinoa HOM05D004721 ORTHO05D005765 1.7e-21 106.3 125 48.0
TWI75G0248 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 1.7e-21 106.3 125 48.8
Hund00240 Selenicereus undatus HOM05D004721 ORTHO05D005765 2.9e-21 105.5 125 48.8
Zm00001eb333360 Zea mays HOM05D004721 ORTHO05D005765 4.9e-21 104.8 125 44.8
ATR1158G041 Amborella trichopoda HOM05D004721 ORTHO05D005765 8.3e-21 104.0 125 46.4
Cc02_g17240 Coffea canephora HOM05D004721 ORTHO05D005765 1.4e-20 103.2 123 45.5
Oeu046144.1 Olea europaea HOM05D004721 ORTHO05D005765 4.1e-20 101.7 122 45.9
unitig_37.g12822 Utricularia gibba HOM05D004721 ORTHO05D005765 7.0e-20 100.9 125 44.8
Lsat_1_v5_gn_9_107961 Lactuca sativa HOM05D004721 ORTHO05D005765 2.0e-19 99.4 118 47.5
Mapoly0009s0236 Marchantia polymorpha HOM05D004721 ORTHO05D005765 3.0e-18 95.5 126 43.7
AagrBONN_evm.TU.Sc2ySwM_117.356 Anthoceros agrestis HOM05D004721 ORTHO05D005765 6.6e-18 94.4 128 40.6
EL10Ac4g09012 Beta vulgaris HOM05D004721 ORTHO05D005765 1.9e-17 92.8 122 43.4
Dinv42038 Davidia involucrata HOM05D004721 ORTHO05D005765 7.3e-17 90.9 115 46.1
Medtr3g117220 Medicago truncatula HOM05D004721 ORTHO05D005765 7.3e-17 90.9 101 49.5
CBR_g50245 Chara braunii HOM05D004721 ORTHO05D005765 1.2e-16 90.1 125 40.0
SMO356G0699 Selaginella moellendorffii HOM05D004721 ORTHO05D005765 1.2e-16 90.1 124 42.7
Pp3c14_5280 Physcomitrium patens HOM05D004721 ORTHO05D005765 3.6e-16 88.6 119 42.0
DCAR_023012 Daucus carota HOM05D004721 ORTHO05D005765 4.7e-16 88.2 100 50.0
Pp3c7_6620 Physcomitrium patens HOM05D004721 ORTHO05D005765 4.7e-16 88.2 119 42.0
Pp3c11_19670 Physcomitrium patens HOM05D004721 ORTHO05D005765 6.2e-16 87.8 119 41.2
Actinidia33624 Actinidia chinensis HOM05D004721 ORTHO05D005765 8.9e-15 84.0 122 39.3
MCO05G057 Micromonas commoda HOM05D004721 ORTHO05D005765 3.4e-14 82.0 125 36.8
Nitab4.5_0003234g0080 Nicotiana tabacum HOM05D004721 ORTHO05D005765 5.8e-14 81.3 62 58.1
DCAR_030585 Daucus carota HOM05D004721 ORTHO05D005765 7.5e-14 80.9 123 37.4
Cre17.g723550 Chlamydomonas reinhardtii HOM05D004721 ORTHO05D005765 2.2e-13 79.3 128 32.8
SHI05562 Sapria himalayana HOM05D004721 ORTHO05D005765 4.9e-13 78.2 116 38.8
AUR62040957 Chenopodium quinoa HOM05D004721 ORTHO05D005765 4.1e-12 75.1 122 37.7
PRCOL_00005559 Prasinoderma coloniale HOM05D004721 ORTHO05D005765 1.2e-11 73.6 124 34.7
TWI77G0152 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 2.7e-11 72.4 123 34.1
TWI77G0224 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 2.7e-11 72.4 123 34.1
TWI77G0506 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 2.7e-11 72.4 123 34.1
TWI77G0992 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 2.7e-11 72.4 123 34.1
TWI34G1838 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 2.3e-10 69.3 117 33.3
Nitab4.5_0005441g0050 Nicotiana tabacum HOM05D004721 ORTHO05D005765 5.1e-10 68.2 121 32.2
Peaxi162Scf01049g00011 Petunia axillaris HOM05D004721 ORTHO05D005765 8.6e-10 67.4 88 40.9
Nitab4.5_0002361g0020 Nicotiana tabacum HOM05D004721 ORTHO05D005765 1.9e-09 66.2 57 52.6
AUR62038677 Chenopodium quinoa HOM05D004721 ORTHO05D005765 4.3e-09 65.1 109 34.9
Haze_27473 Corylus avellana HOM05D004721 ORTHO05D005765 1.6e-08 63.2 116 35.3
AUR62024760 Chenopodium quinoa HOM05D004721 ORTHO05D005765 8.1e-08 60.8 112 31.2
Nitab4.5_0015623g0010 Nicotiana tabacum HOM05D004721 ORTHO05D005765 1.1e-07 60.5 92 38.0
Peaxi162Scf01112g00011 Petunia axillaris HOM05D004721 ORTHO05D005765 1.8e-07 59.7 117 32.5
AUR62037690 Chenopodium quinoa HOM05D000031 ORTHO05D001033 1.2e-06 57.0 49 53.1
PGR042G3536 Punica granatum HOM05D004721 ORTHO05D005765 1.5e-06 56.6 49 63.3
AUR62016772 Chenopodium quinoa HOM05D004721 ORTHO05D005765 2.6e-06 55.8 65 44.6
Nitab4.5_0000632g0120 Nicotiana tabacum HOM05D004721 ORTHO05D005765 5.8e-06 54.7 88 37.5
Sopen01g041380 Solanum pennellii HOM05D004721 ORTHO05D005765 7.6e-06 54.3 33 69.7


User provided reference genes

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