Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.6e-120 436.0 209 100.0
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.6e-120 436.0 209 100.0
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.6e-120 436.0 209 100.0
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.6e-120 436.0 209 100.0
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.6e-120 436.0 209 100.0
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.6e-120 436.0 209 100.0
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.6e-120 436.0 209 100.0
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.6e-120 436.0 209 100.0
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.6e-120 436.0 209 100.0
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.4e-119 433.0 209 99.5
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.4e-119 433.0 209 99.5
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 2.4e-116 422.2 209 97.6
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 2.9e-114 415.2 209 96.2
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 3.8e-114 414.8 209 96.7
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 5.0e-114 414.5 209 96.2
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 2.5e-113 412.1 209 95.2
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 2.5e-113 412.1 209 95.2
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 9.4e-113 410.2 207 96.6
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 7.9e-112 407.1 209 95.7
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 5.1e-111 404.4 209 94.7
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 5.1e-111 404.4 209 95.7
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 1.1e-110 403.3 207 95.2
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 1.5e-110 402.9 209 95.2
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 2.0e-110 402.5 208 95.7
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 4.4e-110 401.4 209 95.2
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 9.7e-110 400.2 208 95.2
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.7e-109 399.4 209 93.8
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.7e-109 399.4 209 93.8
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.2e-109 397.1 209 93.8
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.1e-108 396.7 209 94.3
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.1e-108 396.7 209 94.3
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 3.5e-107 391.7 209 93.3
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 1.3e-106 389.8 209 92.8
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 3.8e-106 388.3 209 92.3
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 2.5e-105 385.6 209 91.9
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 1.6e-104 382.9 194 95.9
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 4.7e-104 381.3 194 95.4
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 6.1e-104 380.9 194 96.4
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 8.0e-104 380.6 194 95.9
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 1.0e-103 380.2 199 94.5
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 1.0e-103 380.2 209 89.5
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.8e-103 379.4 195 95.9
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 8.8e-103 377.1 195 95.4
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-102 376.3 207 87.4
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 2.8e-101 372.1 209 89.5
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.2e-99 366.7 194 93.8
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 7.7e-99 364.0 188 95.7
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.0e-98 363.6 209 86.6
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.7e-98 362.8 209 87.1
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.5e-97 359.8 187 94.1
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.5e-97 359.8 187 94.1
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 2.1e-96 355.9 209 87.6
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 2.7e-91 339.0 209 82.3
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 3.2e-89 332.0 208 82.7
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 2.7e-88 328.9 209 80.4
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 1.3e-82 310.1 194 82.5
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 6.6e-82 307.8 155 96.1
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 6.6e-82 307.8 155 96.1
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 9.5e-81 303.9 158 95.6
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 3.0e-79 298.9 165 91.5
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 4.4e-78 295.0 157 93.6
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 6.3e-77 291.2 156 92.3
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 2.0e-75 286.2 148 95.3
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.8e-75 284.3 201 74.6
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 1.3e-74 283.5 195 76.4
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.8e-72 275.8 144 95.1
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 4.7e-72 275.0 145 93.1
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 4.0e-71 271.9 143 93.7
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 8.9e-71 270.8 150 91.3
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 6.0e-67 258.1 129 96.9
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 1.4e-63 246.9 148 83.8
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 8.3e-61 237.7 192 66.1
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 8.6e-58 227.6 215 53.0
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 3.3e-57 225.7 120 95.0
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.2e-56 221.5 173 69.9
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.0e-55 218.8 128 84.4
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 2.5e-49 199.5 117 88.0
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 2.5e-49 199.5 101 97.0
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 2.8e-48 196.1 109 89.0
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.7e-48 195.3 104 89.4
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 1.5e-46 190.3 105 90.5
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 9.2e-44 181.0 84 100.0
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 4.6e-43 178.7 165 60.6
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 1.0e-42 177.6 209 48.8
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 3.1e-39 166.0 89 89.9
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 9.0e-39 164.5 92 85.9
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 1.6e-35 153.7 81 91.4
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.6e-33 144.4 107 71.0
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 4.8e-32 142.1 82 87.8
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.1e-31 139.4 149 55.0
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.6e-30 134.8 83 83.1
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 6.4e-29 131.7 69 91.3
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 1.4e-28 130.6 63 95.2
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 2.4e-28 129.8 66 92.4
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 3.2e-28 129.4 80 80.0
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 5.4e-28 128.6 75 84.0
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 1.3e-26 124.0 203 36.9
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 8.7e-26 121.3 154 48.7
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-25 120.6 104 64.4
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-24 117.5 62 88.7
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.6e-24 117.1 79 75.9
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 3.1e-23 112.8 68 79.4
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 3.8e-21 105.9 56 89.3
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 9.3e-20 101.3 52 92.3
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.0e-18 97.8 63 76.2
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 4.3e-17 92.4 45 93.3
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 4.3e-17 92.4 65 73.8
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.3e-16 90.9 47 91.5
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-16 90.9 86 59.3
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 4.8e-16 89.0 61 67.2
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 2.6e-14 83.2 84 52.4
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 7.6e-14 81.6 53 84.9
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-13 80.9 39 89.7
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.9e-13 79.7 53 81.1
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 6.5e-13 78.6 65 60.0
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 1.4e-12 77.4 59 71.2
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 4.2e-12 75.9 65 60.0
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.1e-12 75.1 56 73.2
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 2.1e-11 73.6 124 41.1
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 3.0e-10 69.7 42 78.6
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.1e-09 67.8 49 73.5
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 3.3e-09 66.2 31 93.5
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 3.7e-08 62.8 49 69.4
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 3.1e-07 59.7 32 84.4
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 3.1e-07 59.7 30 83.3
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 3.1e-07 59.7 25 100.0
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.3e-07 58.9 26 92.3
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 9.0e-07 58.2 31 83.9
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-06 57.8 68 48.5


User provided reference genes

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