Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraSC59t46557Z Brassica rapa HOM05D008016 ORTHO05D004271 3.9e-60 234.6 116 100.0
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-41 173.3 109 81.7
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 1.1e-41 173.3 109 81.7
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-41 173.3 109 81.7
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 1.1e-41 173.3 109 81.7
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 1.1e-41 173.3 109 81.7
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 1.1e-41 173.3 109 81.7
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 1.6e-37 159.5 110 76.4
BraSC179t45783Z Brassica rapa HOM05D008016 ORTHO05D004271 9.7e-35 150.2 89 89.9
BolSC44t60833H Brassica oleracea HOM05D008016 ORTHO05D004271 1.7e-34 149.4 108 73.1
Gohir.1Z049482 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.5e-27 126.3 61 96.7
C04p22520 Brassica napus HOM05D008016 ORTHO05D004271 4.1e-25 118.2 55 100.0
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 4.1e-25 118.2 55 100.0
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 4.1e-25 118.2 55 100.0
Migut.A01208 Erythranthe guttata HOM05D008016 ORTHO05D004271 7.7e-24 114.0 80 73.8
Gohir.A09G103364 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.0e-23 113.6 55 96.4
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 2.2e-23 112.5 96 69.8
Nitab4.5_0005831g0110 Nicotiana tabacum HOM05D008016 ORTHO05D011667 3.8e-23 111.7 64 85.9
Gohir.A13G086605 Gossypium hirsutum HOM05D008016 ORTHO05D004271 5.0e-23 111.3 55 94.5
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 6.5e-23 110.9 55 96.4
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 6.5e-23 110.9 62 93.5
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 6.5e-23 110.9 62 93.5
Solyc06g043035.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 8.5e-23 110.5 87 69.0
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 1.9e-22 109.4 86 66.3
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 1.9e-22 109.4 86 66.3
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 1.9e-22 109.4 86 66.3
RcHm_v2.0_Chr4g0392721 Rosa chinensis HOM05D008016 ORTHO05D004271 2.1e-21 105.9 62 85.5
Lalb_Chr15g0080721 Lupinus albus HOM05D008016 ORTHO05D004271 2.7e-21 105.5 58 89.7
Nitab4.5_0001170g0110 Nicotiana tabacum HOM05D008016 ORTHO05D004271 1.0e-20 103.6 62 82.3
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 1.0e-20 103.6 63 84.1
Gohir.A07G174766 Gossypium hirsutum HOM05D008016 ORTHO05D004271 2.3e-20 102.4 50 94.0
BolSC45t60899H Brassica oleracea HOM05D008016 ORTHO05D004271 2.6e-19 99.0 75 72.0
Lalb_Chr03g0039361 Lupinus albus HOM05D008016 ORTHO05D004271 4.4e-19 98.2 54 88.9
Gohir.A09G101825 Gossypium hirsutum HOM05D008016 ORTHO05D004271 9.7e-19 97.1 69 69.6
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 9.1e-17 90.5 52 86.5
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 8.5e-15 84.0 43 90.7
Glyma.15G274900 Glycine max HOM05D008016 ORTHO05D004271 2.3e-12 75.9 63 61.9
Lsat_1_v5_gn_2_98441 Lactuca sativa HOM05D008016 ORTHO05D004271 2.0e-11 72.8 42 83.3
Gohir.1Z049580 Gossypium hirsutum HOM05D008016 ORTHO05D004271 5.7e-11 71.2 33 100.0
Nitab4.5_0004841g0080 Nicotiana tabacum HOM05D008037 ORTHO05D004271 5.7e-11 71.2 59 67.8
Solyc11g044665.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 2.2e-10 69.3 62 64.5
arahy.Tifrunner.gnm1.ann1.DEN066 Arachis hypogaea HOM05D001966 ORTHO05D031508 4.1e-09 65.1 49 77.6
Lalb_Chr20g0115041 Lupinus albus HOM05D008016 ORTHO05D004271 7.0e-09 64.3 58 63.8
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 7.0e-09 64.3 33 93.9
BolSC29t60497H Brassica oleracea HOM05D008016 ORTHO05D010588 9.1e-09 63.9 55 63.6
CiPaw.14G028800 Carya illinoinensis HOM05D008016 ORTHO05D004271 1.2e-08 63.5 55 60.0
MD00G1140100 Malus domestica HOM05D008016 ORTHO05D004271 1.2e-08 63.5 34 88.2
arahy.Tifrunner.gnm1.ann1.KSIE27 Arachis hypogaea HOM05D008037 ORTHO05D004271 1.7e-07 59.7 58 58.6
Gohir.A02G134102 Gossypium hirsutum HOM05D008016 ORTHO05D004271 6.6e-07 57.8 27 100.0
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 2.5e-06 55.8 59 55.9
Manes.07G046200 Manihot esculenta HOM05D008037 ORTHO05D004271 5.5e-06 54.7 40 70.0


User provided reference genes

Program Settings