Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 4.1e-33 144.1 68 100.0
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 1.8e-20 102.1 50 94.0
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 1.8e-20 102.1 50 94.0
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 1.8e-20 102.1 50 94.0
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 1.8e-20 102.1 50 94.0
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.8e-20 102.1 50 94.0
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 6.8e-20 100.1 50 90.0
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 3.4e-19 97.8 49 91.8
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 3.4e-19 97.8 49 91.8
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 3.4e-19 97.8 49 91.8
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 3.4e-19 97.8 49 91.8
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 3.4e-19 97.8 49 91.8
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 1.0e-12 76.3 50 66.0
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 1.0e-12 76.3 50 66.0
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.0e-12 76.3 50 66.0
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 5.7e-11 70.5 46 65.2
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 9.8e-11 69.7 47 63.8
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 9.8e-11 69.7 47 63.8
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 1.7e-10 68.9 50 64.0
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 1.7e-10 68.9 47 66.0
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 2.8e-10 68.2 48 68.8
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 2.8e-10 68.2 50 66.0
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 2.8e-10 68.2 47 59.6
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 3.7e-10 67.8 50 64.0
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 3.7e-10 67.8 48 58.3
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 4.8e-10 67.4 50 56.0
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 6.3e-10 67.0 49 61.2
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 6.3e-10 67.0 48 58.3
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 8.3e-10 66.6 46 58.7
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-09 66.2 49 55.1
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 1.4e-09 65.9 48 56.2
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.8e-09 65.5 50 58.0
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 1.8e-09 65.5 48 64.6
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 2.4e-09 65.1 47 63.8
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.4e-09 65.1 49 53.1
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.4e-09 65.1 49 53.1
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.4e-09 65.1 49 53.1
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.4e-09 65.1 49 53.1
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.4e-09 65.1 49 53.1
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.4e-09 65.1 49 53.1
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.1e-09 64.3 49 53.1
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 5.4e-09 63.9 48 56.2
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 5.4e-09 63.9 48 56.2
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 9.1e-09 63.2 47 55.3
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.5e-08 60.8 49 51.0
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 4.5e-08 60.8 48 54.2
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 5.9e-08 60.5 48 54.2
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 7.7e-08 60.1 46 52.2
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 1.7e-07 58.9 47 55.3
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 1.7e-07 58.9 48 54.2
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 8.6e-07 56.6 48 54.2
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 8.6e-07 56.6 48 54.2
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 8.6e-07 56.6 48 54.2
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 8.6e-07 56.6 48 54.2
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 8.6e-07 56.6 48 54.2
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 8.6e-07 56.6 48 56.2
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 2.5e-06 55.1 48 52.1
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 3.3e-06 54.7 44 45.5
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 3.3e-06 54.7 44 45.5
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.3e-06 54.7 70 42.9
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.3e-06 54.7 47 57.4
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.3e-06 54.7 47 57.4
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.3e-06 54.7 47 57.4
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 3.3e-06 54.7 46 47.8
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 4.2e-06 54.3 46 60.9
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 5.5e-06 53.9 47 48.9
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 7.2e-06 53.5 44 45.5


User provided reference genes

Program Settings