Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 2.1e-35 151.8 72 100.0
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 2.8e-24 114.8 71 78.9
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 2.8e-24 114.8 71 78.9
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 2.8e-24 114.8 71 78.9
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 2.8e-24 114.8 71 78.9
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 3.7e-24 114.4 71 78.9
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 3.7e-24 114.4 71 78.9
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 3.7e-24 114.4 71 78.9
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 8.2e-24 113.2 71 77.5
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 3.1e-23 111.3 71 74.6
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 4.0e-23 110.9 52 100.0
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 1.3e-21 105.9 72 73.6
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 3.8e-21 104.4 71 73.2
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 6.5e-21 103.6 71 73.2
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 6.5e-21 103.6 71 73.2
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 6.5e-21 103.6 71 71.8
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 6.5e-21 103.6 71 71.8
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 8.4e-21 103.2 71 71.8
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 2.5e-20 101.7 71 70.4
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 2.5e-20 101.7 71 70.4
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 2.5e-20 101.7 71 70.4
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 3.2e-20 101.3 71 70.4
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 5.5e-20 100.5 71 70.4
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 5.5e-20 100.5 71 70.4
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 5.5e-20 100.5 71 70.4
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 7.1e-20 100.1 71 69.0
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 7.1e-20 100.1 71 70.4
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 9.3e-20 99.8 71 70.4
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 1.2e-19 99.4 71 70.4
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 1.2e-19 99.4 71 69.0
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 1.6e-19 99.0 71 69.0
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 1.6e-19 99.0 71 69.0
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 1.6e-19 99.0 71 69.0
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.6e-19 99.0 71 69.0
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 2.1e-19 98.6 71 69.0
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 2.1e-19 98.6 71 69.0
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 2.7e-19 98.2 71 67.6
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 2.7e-19 98.2 71 67.6
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 2.7e-19 98.2 71 67.6
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 3.5e-19 97.8 61 77.0
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 4.6e-19 97.4 69 69.6
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 6.1e-19 97.1 71 69.0
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 1.0e-18 96.3 71 67.6
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 1.0e-18 96.3 71 66.2
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 6.7e-18 93.6 71 66.2
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 9.7e-17 89.7 71 66.2
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 3.7e-16 87.8 71 63.4
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 3.2e-12 74.7 71 59.2
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 7.2e-12 73.6 56 66.1
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 3.0e-10 68.2 40 75.0
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 9.7e-09 63.2 34 85.3
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.2e-08 62.0 35 85.7
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 3.1e-07 58.2 53 56.6


User provided reference genes

Program Settings