Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraSC328t45965Z Brassica rapa HOM05D003637 ORTHO05D004175 9.6e-37 156.4 82 100.0
BNapus_Darmor_BZH_scaffold_122p00030 Brassica napus HOM05D003637 ORTHO05D004175 6.2e-36 153.7 82 97.6
BNapus_Darmor_BZH_scaffold_99p00040 Brassica napus HOM05D003637 ORTHO05D004175 1.8e-35 152.1 82 96.3
BcaNung05408 Brassica carinata HOM05D003637 ORTHO05D004175 2.4e-35 151.8 82 95.1
BolC1t05898H Brassica oleracea HOM05D003637 ORTHO05D004175 5.3e-35 150.6 82 93.9
BcaB04g21398 Brassica carinata HOM05D003637 ORTHO05D004175 3.4e-34 147.9 83 94.0
Sp3g01790 Schrenkiella parvula HOM05D003637 ORTHO05D004175 4.4e-34 147.5 82 92.7
BcaB04g19390 Brassica carinata HOM05D003637 ORTHO05D004175 1.3e-33 146.0 82 90.2
A03p33090 Brassica napus HOM05D003637 ORTHO05D004175 1.9e-32 142.1 82 87.8
C03p40270 Brassica napus HOM05D003637 ORTHO05D004175 4.2e-32 141.0 82 86.6
BolC3t16292H Brassica oleracea HOM05D003637 ORTHO05D004175 5.4e-32 140.6 82 85.4
BraA03t12479Z Brassica rapa HOM05D003637 ORTHO05D004175 5.4e-32 140.6 82 86.6
Thhalv10020033m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 1.2e-31 139.4 82 86.6
Thhalv10001912m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 1.9e-29 132.1 81 80.2
Aa31LG5G13230 Aethionema arabicum HOM05D003637 ORTHO05D004175 5.6e-29 130.6 81 79.0
Aa31LG11G13210 Aethionema arabicum HOM05D003637 ORTHO05D004175 9.6e-29 129.8 81 77.8
Carub.0003s0186 Capsella rubella HOM05D003637 ORTHO05D004175 1.4e-27 125.9 82 79.3
AL3G12170 Arabidopsis lyrata HOM05D003637 ORTHO05D004175 1.8e-27 125.6 82 80.5
AT3G02760 Arabidopsis thaliana HOM05D003637 ORTHO05D004175 2.4e-27 125.2 82 79.3
THA.LOC104820917 Tarenaya hassleriana HOM05D003637 ORTHO05D004175 6.9e-27 123.6 81 75.3
CARHR076770 Cardamine hirsuta HOM05D003637 ORTHO05D004175 2.9e-25 118.2 81 74.1
BcaC06g34238 Brassica carinata HOM05D001392 ORTHO05D032327 1.1e-24 116.3 82 75.6
Haze_13959 Corylus avellana HOM05D003637 ORTHO05D004175 2.3e-22 108.6 81 61.7
Cpa.g.sc1431.2 Carica papaya HOM05D003637 ORTHO05D004175 3.9e-22 107.8 81 63.0
Cfa008076 Carpinus fangiana HOM05D003637 ORTHO05D004175 1.1e-21 106.3 81 59.3
Ciclev10018820m.g Citrus clementina HOM05D003637 ORTHO05D004175 1.1e-21 106.3 81 63.0
Manes.02G201900 Manihot esculenta HOM05D003637 ORTHO05D004175 1.1e-21 106.3 81 61.7
C03p76060 Brassica napus HOM05D000516 ORTHO05D000409 1.9e-21 105.5 82 70.7
vmacro18730 Vaccinium macrocarpon HOM05D003637 ORTHO05D004175 1.9e-21 105.5 82 64.6
BolC9t58620H Brassica oleracea HOM05D003550 ORTHO05D004336 4.3e-21 104.4 76 73.7
MD10G1004600 Malus domestica HOM05D003637 ORTHO05D004175 5.6e-21 104.0 81 64.2
Nn3g21609 Nelumbo nucifera HOM05D003637 ORTHO05D004175 9.6e-21 103.2 81 59.3
CiPaw.03G014200 Carya illinoinensis HOM05D003637 ORTHO05D004175 2.1e-20 102.1 81 56.8
Rhsim08G0251700 Rhododendron simsii HOM05D003637 ORTHO05D004175 2.1e-20 102.1 82 63.4
Atru.chr13.2499 Acer truncatum HOM05D003637 ORTHO05D004175 2.8e-20 101.7 81 63.0
MD05G1003500 Malus domestica HOM05D003637 ORTHO05D004175 3.7e-20 101.3 81 60.5
Atru.chr13.2508 Acer truncatum HOM05D003637 ORTHO05D004175 4.8e-20 100.9 78 65.4
CsaV3_2G033230 Cucumis sativus L. HOM05D003637 ORTHO05D004175 6.2e-20 100.5 81 55.6
GSVIVG01036288001 Vitis vinifera HOM05D003637 ORTHO05D004175 6.2e-20 100.5 80 60.0
CANSAT35G0345 Cannabis sativa HOM05D003637 ORTHO05D004175 8.1e-20 100.1 81 59.3
CANSAT64G0718 Cannabis sativa HOM05D003637 ORTHO05D004175 8.1e-20 100.1 81 60.5
Prupe.8G006900 Prunus persica HOM05D003637 ORTHO05D004175 1.1e-19 99.8 81 59.3
QL09p050166 Quercus lobata HOM05D003637 ORTHO05D004175 2.4e-19 98.6 82 58.5
ClCG11G008420 Citrullus lanatus HOM05D003637 ORTHO05D004175 3.1e-19 98.2 81 55.6
MELO3C008093.2 Cucumis melo HOM05D003637 ORTHO05D004175 4.0e-19 97.8 81 54.3
TAR628G0957 Trochodendron aralioides HOM05D003637 ORTHO05D004175 4.0e-19 97.8 81 58.0
QL09p001806 Quercus lobata HOM05D003637 ORTHO05D004175 5.3e-19 97.4 82 58.5
QL11p001805 Quercus lobata HOM05D003637 ORTHO05D004175 5.3e-19 97.4 82 58.5
PGR083G1739 Punica granatum HOM05D003637 ORTHO05D004175 6.9e-19 97.1 80 60.0
Eucgr.F02946 Eucalyptus grandis HOM05D003637 ORTHO05D004175 9.0e-19 96.7 82 59.8
PGR042G1411 Punica granatum HOM05D003637 ORTHO05D004175 1.2e-18 96.3 80 58.8
Sed0019638 Sechium edule HOM05D003637 ORTHO05D004175 1.2e-18 96.3 81 55.6
RcHm_v2.0_Chr6g0251201 Rosa chinensis HOM05D003637 ORTHO05D004175 2.0e-18 95.5 81 58.0
Cfa004677 Carpinus fangiana HOM05D003637 ORTHO05D004175 2.6e-18 95.1 82 53.7
Eucgr.E00010 Eucalyptus grandis HOM05D003637 ORTHO05D004175 3.4e-18 94.7 83 59.0
Haze_10275 Corylus avellana HOM05D003637 ORTHO05D004175 4.5e-18 94.4 82 53.7
Peaxi162Scf00194g01048 Petunia axillaris HOM05D003637 ORTHO05D004175 4.5e-18 94.4 83 59.0
Sc25g0003100 Simmondsia chinensis HOM05D003637 ORTHO05D004175 4.5e-18 94.4 81 55.6
SHI17420 Sapria himalayana HOM05D003637 ORTHO05D004175 5.8e-18 94.0 81 54.3
FAN20G2805 Fragaria x ananassa HOM05D003637 ORTHO05D004175 1.0e-17 93.2 74 60.8
Aqoxy1G03903 Aquilegia oxysepala HOM05D003637 ORTHO05D004175 1.3e-17 92.8 80 58.8
arahy.Tifrunner.gnm1.ann1.ICJU69 Arachis hypogaea HOM05D003637 ORTHO05D004175 1.3e-17 92.8 81 54.3
FvH4_2g00780 Fragaria vesca HOM05D003637 ORTHO05D004175 1.3e-17 92.8 74 58.1
FAN24G0737 Fragaria x ananassa HOM05D003637 ORTHO05D004175 1.3e-17 92.8 74 58.1
FAN14G4419 Fragaria x ananassa HOM05D003637 ORTHO05D004175 2.2e-17 92.0 74 59.5
FAN27G1433 Fragaria x ananassa HOM05D003637 ORTHO05D004175 2.2e-17 92.0 74 59.5
arahy.Tifrunner.gnm1.ann1.TE3K01 Arachis hypogaea HOM05D003637 ORTHO05D004175 2.9e-17 91.7 80 53.8
arahy.Tifrunner.gnm1.ann1.JT5ZHZ Arachis hypogaea HOM05D003637 ORTHO05D004175 4.9e-17 90.9 81 53.1
Phvul.002G320100 Phaseolus vulgaris HOM05D003637 ORTHO05D004175 8.4e-17 90.1 81 49.4
EL10Ac1g01273 Beta vulgaris HOM05D003637 ORTHO05D004175 1.1e-16 89.7 81 54.3
arahy.Tifrunner.gnm1.ann1.5D638A Arachis hypogaea HOM05D003637 ORTHO05D004175 1.4e-16 89.4 80 52.5
PSO063G3025 Papaver somniferum HOM05D003637 ORTHO05D004175 1.4e-16 89.4 82 54.9
PSO782G5164 Papaver somniferum HOM05D003637 ORTHO05D004175 1.4e-16 89.4 82 54.9
VMungo0251G0405 Vigna mungo HOM05D003637 ORTHO05D004175 1.4e-16 89.4 81 48.1
AUR62038534 Chenopodium quinoa HOM05D003637 ORTHO05D004175 1.9e-16 89.0 81 54.3
Ah.05g170380 Amaranthus hybridus HOM05D003637 ORTHO05D004175 2.5e-16 88.6 81 56.8
Glyma.05G234900 Glycine max HOM05D003637 ORTHO05D004175 2.5e-16 88.6 81 50.6
HanXRQChr07g0194841 Helianthus annuus HOM05D003637 ORTHO05D004175 2.5e-16 88.6 82 57.3
BcaB02g10025 Brassica carinata HOM05D004950 ORTHO05D032427 5.5e-16 87.4 72 68.1
CSS0048399 Camellia sinensis var. sinensis HOM05D003637 ORTHO05D004175 5.5e-16 87.4 83 57.8
Nitab4.5_0000110g0370 Nicotiana tabacum HOM05D003637 ORTHO05D004175 9.3e-16 86.7 82 56.1
MSTRG.13350 Avicennia marina HOM05D003637 ORTHO05D004175 1.2e-15 86.3 84 53.6
CAN.G1379.10 Capsicum annuum HOM05D003637 ORTHO05D004175 1.2e-15 86.3 82 56.1
Glyma.08G042400 Glycine max HOM05D003637 ORTHO05D004175 1.2e-15 86.3 81 48.1
Nitab4.5_0001497g0160 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.2e-15 86.3 82 54.9
Nitab4.5_0003246g0090 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.6e-15 85.9 82 56.1
TWI38G2004 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 1.6e-15 85.9 77 54.5
Lj4g0018134 Lotus japonicus HOM05D003637 ORTHO05D004175 2.1e-15 85.5 81 48.1
Lalb_Chr16g0387641 Lupinus albus HOM05D003637 ORTHO05D004175 2.1e-15 85.5 81 49.4
Ca_14602_v3 Cicer arietinum L. HOM05D003637 ORTHO05D004175 4.6e-15 84.3 81 50.6
SalBow8G3371 Salvia bowleyana HOM05D003637 ORTHO05D004175 4.6e-15 84.3 81 55.6
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 4.6e-15 84.3 84 51.2
Psat6g083160 Pisum sativum HOM05D003637 ORTHO05D004175 6.0e-15 84.0 79 50.6
PGSC0003DMG400018260 Solanum tuberosum HOM05D003637 ORTHO05D004175 6.0e-15 84.0 82 54.9
Lsat_1_v5_gn_3_57620 Lactuca sativa HOM05D003637 ORTHO05D004175 7.9e-15 83.6 82 52.4
Lj8A738T8 Lonicera japonica HOM05D003637 ORTHO05D004175 7.9e-15 83.6 85 54.1
Solyc01g102800.3 Solanum lycopersicum HOM05D003637 ORTHO05D004175 1.3e-14 82.8 82 53.7
Sopen01g045200 Solanum pennellii HOM05D003637 ORTHO05D004175 1.3e-14 82.8 82 53.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.8e-14 82.4 76 52.6
Hund26943 Selenicereus undatus HOM05D003637 ORTHO05D004175 1.8e-14 82.4 83 50.6
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 1.8e-14 82.4 84 50.0
Lsat_1_v5_gn_1_27560 Lactuca sativa HOM05D003637 ORTHO05D004175 2.3e-14 82.0 82 51.2
AUR62013381 Chenopodium quinoa HOM05D003637 ORTHO05D004175 3.0e-14 81.6 81 51.9
Lsat_1_v5_gn_2_108061 Lactuca sativa HOM05D003637 ORTHO05D004175 3.9e-14 81.3 79 55.7
Medtr1g057860 Medicago truncatula HOM05D003637 ORTHO05D004175 5.1e-14 80.9 73 52.1
Potri.019G071400 Populus trichocarpa HOM05D003637 ORTHO05D004175 5.1e-14 80.9 76 52.6
Lj9C543T19 Lonicera japonica HOM05D003637 ORTHO05D004175 8.7e-14 80.1 84 51.2
TWI39G1182 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 1.9e-13 79.0 78 51.3
C04p34940 Brassica napus HOM05D004950 ORTHO05D004838 2.5e-13 78.6 82 57.3
BolC4t25048H Brassica oleracea HOM05D004950 ORTHO05D004838 2.5e-13 78.6 82 57.3
MBI03_g13500_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 3.3e-13 78.2 78 51.3
Oeu017573.1 Olea europaea HOM05D003637 ORTHO05D004175 5.7e-13 77.4 84 50.0
Duzib106G1310 Durio zibethinus HOM05D003637 ORTHO05D004175 7.4e-13 77.0 88 50.0
HanXRQChr01g0009581 Helianthus annuus HOM05D003637 ORTHO05D004175 7.4e-13 77.0 82 52.4
MBI06_g32172_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 7.4e-13 77.0 81 48.1
QL06p049632 Quercus lobata HOM05D003637 ORTHO05D004175 7.4e-13 77.0 70 54.3
Thecc.05G195900 Theobroma cacao HOM05D003637 ORTHO05D004175 1.3e-12 76.3 88 48.9
TPR.G8734 Trifolium pratense HOM05D003637 ORTHO05D004175 2.8e-12 75.1 77 46.8
ECA238G2554 Erigeron canadensis HOM05D003637 ORTHO05D004175 3.7e-12 74.7 85 50.6
Duzib177G0609 Durio zibethinus HOM05D003637 ORTHO05D004175 4.8e-12 74.3 88 46.6
Lsat_1_v5_gn_8_62500 Lactuca sativa HOM05D003637 ORTHO05D004175 8.2e-12 73.6 83 49.4
PSO513G0157 Papaver somniferum HOM05D003637 ORTHO05D004175 1.1e-11 73.2 85 50.6
COL.COLO4_20337 Corchorus olitorius HOM05D003637 ORTHO05D004175 1.4e-11 72.8 88 45.5
HPP92_000900 Vanilla planifolia HOM05D003637 ORTHO05D004175 2.4e-11 72.0 80 46.2
Cc04_g00120 Coffea canephora HOM05D003637 ORTHO05D004175 4.0e-11 71.2 85 43.5
DCAR_014239 Daucus carota HOM05D003637 ORTHO05D004175 4.0e-11 71.2 86 47.7
Oeu019452.1 Olea europaea HOM05D003637 ORTHO05D004175 6.9e-11 70.5 84 46.4
Os05g0150900 Oryza sativa ssp. japonica HOM05D003637 ORTHO05D004175 6.9e-11 70.5 82 43.9
Gohir.D08G246100 Gossypium hirsutum HOM05D003637 ORTHO05D004175 1.5e-10 69.3 88 42.0
Gorai.004G262600 Gossypium raimondii HOM05D003637 ORTHO05D004175 1.5e-10 69.3 88 42.0
Zm00001eb354240 Zea mays HOM05D003637 ORTHO05D004175 3.4e-10 68.2 85 42.4
Gohir.A08G225700 Gossypium hirsutum HOM05D003637 ORTHO05D004175 7.6e-10 67.0 88 40.9
Zm00001eb267790 Zea mays HOM05D003637 ORTHO05D004175 2.9e-09 65.1 84 42.9
PSO210G5637 Papaver somniferum HOM05D003637 ORTHO05D004175 5.0e-09 64.3 83 45.8
Nitab4.5_0002446g0110 Nicotiana tabacum HOM05D003637 ORTHO05D004175 8.4e-09 63.5 61 54.1
ATR1136G178 Amborella trichopoda HOM05D003637 ORTHO05D004175 1.4e-08 62.8 87 42.5
Migut.E00203 Erythranthe guttata HOM05D003637 ORTHO05D004175 1.9e-08 62.4 81 42.0
Lsat_1_v5_gn_3_107861 Lactuca sativa HOM05D003637 ORTHO05D004175 1.9e-08 62.4 82 45.1


User provided reference genes

Program Settings