Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 2.8e-93 345.1 159 100.0
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 2.8e-93 345.1 159 100.0
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 2.8e-93 345.1 159 100.0
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 2.8e-93 345.1 159 100.0
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 2.8e-93 345.1 159 100.0
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 2.8e-93 345.1 159 100.0
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 2.8e-93 345.1 159 100.0
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 2.8e-93 345.1 159 100.0
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 2.8e-93 345.1 159 100.0
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 2.8e-93 345.1 159 100.0
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 2.8e-93 345.1 159 100.0
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 2.8e-93 345.1 159 100.0
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 98.7
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 99.4
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 9.1e-92 340.1 159 98.7
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 8.5e-90 333.6 159 96.9
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 1.9e-89 332.4 154 99.4
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 3.3e-86 321.6 159 92.5
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 7.4e-86 320.5 159 91.8
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 1.3e-85 319.7 159 91.8
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.2e-85 318.9 159 90.6
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 2.8e-85 318.5 159 91.2
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 3.7e-85 318.2 159 90.6
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 6.3e-85 317.4 159 90.6
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 91.2
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 91.2
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 1.1e-84 316.6 159 89.3
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.4e-84 316.2 159 91.2
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 1.4e-84 316.2 159 89.9
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 1.8e-84 315.8 159 90.6
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 1.8e-84 315.8 159 89.3
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 2.4e-84 315.5 159 89.3
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 3.1e-84 315.1 159 89.3
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 3.1e-84 315.1 159 89.3
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 5.3e-84 314.3 159 89.9
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 9.1e-84 313.5 158 90.5
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 9.1e-84 313.5 159 87.4
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-83 313.2 159 89.3
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-83 313.2 159 89.3
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-83 313.2 159 89.3
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-83 313.2 159 89.3
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-83 313.2 159 89.3
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-83 313.2 159 89.3
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-83 313.2 159 89.3
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-83 313.2 159 89.3
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-83 313.2 159 89.3
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-83 313.2 159 89.3
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 1.2e-83 313.2 160 89.4
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 2.6e-83 312.0 159 88.1
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 2.6e-83 312.0 159 89.3
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 4.5e-83 311.2 159 86.8
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 1.0e-82 310.1 159 88.7
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 1.3e-82 309.7 159 88.7
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 2.2e-82 308.9 157 89.2
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 2.2e-82 308.9 157 89.2
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 2.2e-82 308.9 157 89.2
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 8.5e-82 307.0 159 91.2
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 1.1e-81 306.6 159 87.4
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 2.5e-81 305.4 159 86.8
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 5.5e-81 304.3 159 86.2
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 8.0e-80 300.4 159 85.5
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 8.0e-80 300.4 151 90.1
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 1.4e-79 299.7 149 94.0
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 1.4e-79 299.7 157 88.5
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 1.4e-79 299.7 159 86.2
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 1.8e-79 299.3 158 85.4
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 2.3e-79 298.9 159 84.9
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 5.7e-78 294.3 158 83.5
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 2.8e-77 292.0 159 85.5
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 9.1e-76 287.0 142 92.3
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 1.6e-75 286.2 159 86.2
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 2.0e-75 285.8 144 89.6
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 2.0e-75 285.8 144 89.6
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 2.0e-75 285.8 144 89.6
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 4.5e-75 284.6 143 91.6
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 1.3e-74 283.1 144 88.2
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 2.2e-74 282.3 159 84.9
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 1.2e-72 276.6 163 82.2
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 2.7e-72 275.4 159 79.2
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 3.6e-72 275.0 139 89.9
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.0e-71 271.9 139 88.5
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.2e-70 270.0 159 78.6
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.2e-69 265.8 159 79.9
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 2.7e-67 258.8 144 84.0
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 3.5e-67 258.5 134 88.8
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.2e-64 250.0 134 85.8
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 3.7e-61 238.4 151 76.2
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 1.8e-60 236.1 159 71.7
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.7e-58 229.6 132 79.5
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 2.3e-58 229.2 107 97.2
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 2.3e-58 229.2 107 97.2
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 2.9e-58 228.8 117 90.6
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.1e-56 222.6 139 74.1
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 5.2e-55 218.0 135 75.6
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 1.2e-54 216.9 136 77.2
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 2.2e-53 212.6 110 91.8
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 4.1e-52 208.4 157 67.5
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 4.1e-52 208.4 105 92.4
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 9.2e-52 207.2 134 75.4
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.7e-51 205.7 112 83.9
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 1.3e-50 203.4 109 86.2
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.3e-50 203.4 159 62.9
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.3e-50 203.4 159 62.9
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.3e-50 203.4 159 62.9
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 8.6e-50 200.7 100 90.0
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 8.6e-50 200.7 100 90.0
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 8.6e-50 200.7 100 90.0
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.3e-49 198.4 101 88.1
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 1.2e-46 190.3 102 84.3
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 1.5e-46 189.9 101 85.1
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.0e-46 189.5 112 79.5
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 2.0e-46 189.5 100 85.0
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 9.8e-46 187.2 89 97.8
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.9e-45 185.7 109 81.7
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 3.7e-45 185.3 95 89.5
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 6.4e-45 184.5 162 61.1
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 4.1e-44 181.8 115 73.0
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.6e-43 179.9 111 74.8
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.6e-43 178.3 109 77.1
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 6.6e-42 174.5 150 66.0
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.9e-41 172.9 108 75.0
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 5.6e-41 171.4 92 85.9
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 1.6e-40 169.9 100 81.0
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 4.0e-39 165.2 90 81.1
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 8.9e-39 164.1 84 88.1
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 1.5e-38 163.3 83 90.4
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 2.0e-38 162.9 83 90.4
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 5.8e-38 161.4 83 89.2
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 7.5e-38 161.0 83 88.0
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 6.4e-37 157.9 83 86.7
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 8.3e-37 157.5 104 69.2
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 2.7e-35 152.5 82 86.6
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 2.3e-34 149.4 87 79.3
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 1.6e-32 143.3 78 82.1
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 2.1e-32 142.9 72 91.7
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.8e-31 139.8 84 78.6
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.1e-31 139.0 78 82.1
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 3.1e-31 139.0 91 72.5
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.5e-30 136.7 83 77.1
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 2.6e-30 136.0 68 91.2
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 7.6e-30 134.4 124 56.5
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 1.9e-28 129.8 65 89.2
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.3e-26 123.6 59 93.2
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 5.6e-25 118.2 57 93.0
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 6.2e-24 114.8 53 98.1
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 6.2e-24 114.8 59 86.4
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 2.0e-22 109.8 55 87.3
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 1.7e-21 106.7 58 81.0
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.2e-21 106.3 69 69.6
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 8.4e-21 104.4 50 94.0
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 1.1e-20 104.0 54 85.2
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 3.2e-20 102.4 99 53.5
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 4.6e-19 98.6 43 100.0
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 5.1e-18 95.1 53 77.4
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 2.5e-17 92.8 86 50.0
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 2.0e-14 83.2 41 87.8
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 9.9e-14 80.9 48 81.2
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 7.1e-12 74.7 39 84.6
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 3.9e-10 68.9 53 62.3
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 2.1e-08 63.2 32 87.5
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 6.2e-08 61.6 68 44.1
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 1.8e-07 60.1 91 31.9
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 6.9e-07 58.2 88 31.8
Nitab4.5_0007578g0070 Nicotiana tabacum HOM05D012508 ORTHO05D011743 6.9e-07 58.2 60 53.3
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 4.5e-06 55.5 24 95.8
BolSC35t60757H Brassica oleracea HOM05D001033 ORTHO05D004888 9.9e-06 54.3 23 100.0
FvH4_3g38401 Fragaria vesca HOM05D001033 ORTHO05D004888 9.9e-06 54.3 27 88.9


User provided reference genes

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