Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 3.7e-17 90.5 47 100.0
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 3.8e-14 80.5 46 87.0
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 3.8e-14 80.5 46 87.0
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 3.8e-14 80.5 46 87.0
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 3.8e-14 80.5 46 87.0
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 5.0e-14 80.1 46 84.8
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 5.0e-14 80.1 46 84.8
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 5.0e-14 80.1 46 84.8
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 5.0e-14 80.1 46 84.8
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 5.0e-14 80.1 46 84.8
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 8.5e-14 79.3 46 84.8
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 8.5e-14 79.3 46 84.8
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 1.1e-13 79.0 46 82.6
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.5e-13 78.6 46 82.6
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.5e-13 78.6 46 82.6
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.5e-13 78.6 46 82.6
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 1.5e-13 78.6 46 82.6
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 1.5e-13 78.6 46 82.6
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 4.2e-13 77.0 46 80.4
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 1.0e-11 72.4 44 81.8
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 1.0e-11 72.4 44 81.8
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 1.0e-11 72.4 44 81.8
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 3.4e-10 67.4 46 65.2
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 2.4e-08 61.2 46 60.9
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 2.4e-08 61.2 46 63.0
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 3.1e-08 60.8 46 58.7
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 4.1e-08 60.5 37 78.4
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 7.0e-08 59.7 46 60.9
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 7.0e-08 59.7 46 60.9
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 7.0e-08 59.7 46 60.9
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 7.0e-08 59.7 46 56.5
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 9.1e-08 59.3 46 60.9
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 9.1e-08 59.3 46 58.7
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 9.1e-08 59.3 46 58.7
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 9.1e-08 59.3 46 58.7
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 9.1e-08 59.3 46 58.7
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 9.1e-08 59.3 46 58.7
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 9.1e-08 59.3 46 58.7
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 9.1e-08 59.3 46 60.9
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 9.1e-08 59.3 46 58.7
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.6e-07 58.5 46 58.7
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 1.6e-07 58.5 46 58.7
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 1.6e-07 58.5 46 58.7
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.0e-07 58.2 46 60.9
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 2.7e-07 57.8 46 56.5
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 5.9e-07 56.6 46 56.5
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 5.9e-07 56.6 46 58.7
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 5.9e-07 56.6 46 58.7
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.9e-07 56.6 46 58.7
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 7.7e-07 56.2 46 54.3
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 7.7e-07 56.2 46 54.3
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 7.7e-07 56.2 46 54.3
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 7.7e-07 56.2 46 54.3
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.0e-06 55.8 46 54.3
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.3e-06 55.5 46 54.3
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.3e-06 55.5 46 58.7
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 1.3e-06 55.5 46 52.2
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 2.2e-06 54.7 46 52.2
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 2.2e-06 54.7 46 52.2
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 2.2e-06 54.7 46 52.2
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.9e-06 54.3 46 54.3
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.9e-06 54.3 46 54.3
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 2.9e-06 54.3 46 52.2
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 2.9e-06 54.3 46 52.2
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.9e-06 54.3 46 52.2
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.9e-06 54.3 46 52.2
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 2.9e-06 54.3 46 56.5
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 2.9e-06 54.3 46 56.5
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 2.9e-06 54.3 46 56.5
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 2.9e-06 54.3 46 56.5
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.9e-06 54.3 46 56.5
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 2.9e-06 54.3 46 52.2
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 2.9e-06 54.3 46 52.2
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.8e-06 53.9 46 52.2
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 3.8e-06 53.9 46 56.5
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 3.8e-06 53.9 46 52.2
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 3.8e-06 53.9 46 52.2
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 3.8e-06 53.9 46 52.2
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 3.8e-06 53.9 46 52.2
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 3.8e-06 53.9 46 52.2
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 5.0e-06 53.5 45 57.8
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 5.0e-06 53.5 46 50.0
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 5.0e-06 53.5 46 52.2
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 5.0e-06 53.5 46 52.2
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 6.5e-06 53.1 46 50.0
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 6.5e-06 53.1 46 50.0
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 8.5e-06 52.8 46 50.0
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 8.5e-06 52.8 46 50.0
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 8.5e-06 52.8 46 52.2
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 8.5e-06 52.8 46 52.2
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 8.5e-06 52.8 46 50.0
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 8.5e-06 52.8 46 50.0
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 8.5e-06 52.8 46 50.0


User provided reference genes

Program Settings