Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 7.8e-222 773.5 387 100.0
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 5.6e-220 767.3 387 99.0
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 3.8e-192 674.9 381 89.5
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 3.9e-189 664.8 335 97.9
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 5.6e-188 661.0 335 97.0
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.6e-187 659.4 335 96.7
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 6.0e-182 641.0 334 93.1
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.3e-181 639.0 335 92.5
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 3.1e-178 628.6 336 91.4
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 2.6e-177 625.5 336 91.1
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 3.4e-177 625.2 336 90.8
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.4e-175 619.8 336 90.5
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 3.0e-173 612.1 335 89.6
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 3.0e-173 612.1 335 89.6
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 5.1e-173 611.3 335 89.9
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 8.8e-173 610.5 335 89.9
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 4.1e-170 601.7 334 90.1
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 2.0e-169 599.4 335 89.0
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 1.0e-157 560.5 335 83.9
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 7.0e-154 547.7 314 87.6
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 9.1e-154 547.4 335 81.2
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.8e-152 542.0 343 79.9
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 4.7e-150 535.0 347 79.0
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 3.5e-137 492.3 336 72.9
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 1.3e-136 490.3 337 73.6
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 1.9e-135 486.5 344 70.9
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 6.1e-134 481.5 343 69.4
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.3e-133 479.6 349 69.9
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 5.2e-133 478.4 336 71.1
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 5.2e-133 478.4 336 71.7
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 1.5e-132 476.9 334 71.0
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 2.6e-132 476.1 343 70.8
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 5.7e-132 474.9 349 70.5
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 2.2e-131 473.0 339 69.9
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 3.7e-131 472.2 346 68.8
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 6.3e-131 471.5 336 71.1
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 6.3e-131 471.5 334 71.3
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 6.3e-131 471.5 350 69.1
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 8.3e-131 471.1 334 71.0
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 1.8e-130 469.9 335 71.6
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.4e-130 469.5 349 68.8
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 5.4e-130 468.4 352 69.0
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 7.0e-130 468.0 337 70.6
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 7.0e-130 468.0 347 70.3
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.6e-129 466.8 345 69.0
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.6e-129 466.8 345 69.0
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 1.6e-129 466.8 346 69.7
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.6e-129 466.8 341 68.9
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 2.0e-129 466.5 336 70.2
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 2.0e-129 466.5 336 70.2
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 2.0e-129 466.5 346 68.2
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.0e-129 466.5 341 68.9
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.5e-129 465.3 329 72.0
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 1.0e-128 464.2 336 69.9
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 1.3e-128 463.8 347 68.6
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.7e-128 463.4 343 68.5
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 6.6e-128 461.5 346 68.8
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 2.5e-127 459.5 329 70.5
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.3e-127 459.1 344 67.7
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 4.3e-127 458.8 346 68.2
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 4.3e-127 458.8 337 68.5
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 5.6e-127 458.4 347 66.9
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.6e-126 456.8 341 68.0
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.0e-125 454.1 340 69.1
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 1.0e-125 454.1 355 67.3
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 1.0e-125 454.1 345 67.2
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 1.8e-125 453.4 347 68.0
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 4.0e-125 452.2 341 66.9
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 4.0e-125 452.2 345 65.5
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 4.0e-125 452.2 336 68.8
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.5e-124 450.3 332 68.7
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.6e-124 449.5 343 67.3
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 2.6e-124 449.5 347 66.6
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.6e-124 449.5 344 66.9
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.4e-124 448.7 338 67.5
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.8e-124 448.4 364 64.0
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 7.5e-124 448.0 343 66.5
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.3e-123 447.2 343 66.8
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.3e-123 447.2 339 67.6
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 4.9e-123 445.3 343 66.8
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 8.3e-123 444.5 336 68.5
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.4e-122 443.7 345 66.4
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.9e-122 443.4 365 64.9
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 5.4e-122 441.8 338 66.6
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 5.4e-122 441.8 346 66.2
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.2e-121 440.7 344 65.4
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.2e-121 440.7 364 64.0
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.6e-121 440.3 366 62.0
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.5e-121 439.1 351 64.1
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.5e-121 439.1 341 66.0
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.3e-120 437.2 337 65.9
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 8.6e-120 434.5 344 65.1
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 8.6e-120 434.5 342 65.2
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 7.3e-119 431.4 339 64.9
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.1e-117 427.6 368 61.1
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.8e-117 426.8 345 64.3
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 4.0e-117 425.6 345 62.9
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 6.8e-117 424.9 346 64.2
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 6.8e-117 424.9 358 63.7
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 1.2e-116 424.1 335 64.2
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.2e-116 424.1 345 62.6
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.5e-116 423.7 345 62.9
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 3.7e-115 419.1 336 64.0
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.7e-115 419.1 358 62.0
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 4.9e-115 418.7 336 63.1
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.6e-113 413.7 342 64.6
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.8e-110 402.9 340 64.1
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 2.8e-110 402.9 324 65.4
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.1e-109 401.0 367 57.5
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.1e-109 401.0 336 62.5
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 1.4e-109 400.6 335 61.5
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 2.3e-109 399.8 344 60.5
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 4.0e-109 399.1 315 64.1
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.5e-108 397.1 365 58.6
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.5e-108 397.1 329 64.7
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 3.4e-108 396.0 342 59.6
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 2.9e-107 392.9 426 52.3
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 4.9e-107 392.1 342 60.2
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.4e-106 390.6 308 64.6
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.7e-105 386.3 366 59.3
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 4.7e-102 375.6 346 58.7
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 4.7e-102 375.6 333 59.8
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 8.1e-102 374.8 357 54.9
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 6.8e-101 371.7 517 44.7
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.5e-100 370.5 347 57.3
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 4.4e-100 369.0 364 55.5
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 2.9e-99 366.3 335 57.6
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 5.1e-96 355.5 395 51.6
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 5.3e-93 345.5 412 49.0
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.1e-90 337.8 354 53.1
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 5.4e-90 335.5 318 57.2
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 4.8e-86 322.4 316 56.6
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.8e-85 320.5 156 93.6
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.3e-83 314.3 361 50.7
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 1.1e-82 311.2 338 51.8
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 4.5e-76 289.3 375 45.3
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 1.3e-72 277.7 249 61.0
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 1.3e-72 277.7 249 61.0
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 3.0e-72 276.6 369 43.6
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.5e-71 273.5 224 60.3
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.3e-67 261.2 227 65.6
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.3e-67 261.2 363 44.1
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 4.9e-67 259.2 360 47.8
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.1e-61 240.0 217 63.1
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.0e-60 237.3 372 40.9
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.0e-56 224.9 339 42.2
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 3.9e-56 223.0 229 48.5
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 7.4e-55 218.8 189 61.4
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.2e-54 217.2 215 58.1
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 6.3e-54 215.7 391 38.6
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 7.4e-47 192.2 173 62.4
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 4.8e-46 189.5 136 74.3
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 6.3e-38 162.5 130 57.7
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 3.6e-33 146.7 71 87.3
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.8e-30 137.1 354 31.6
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 8.3e-30 135.6 115 58.3
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 9.1e-29 132.1 104 61.5
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 5.9e-28 129.4 329 32.2
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 5.2e-16 89.7 84 59.5
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.2e-13 80.5 63 65.1
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 3.1e-08 63.9 34 76.5


User provided reference genes

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