Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 1.6e-82 309.3 146 100.0
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 5.1e-81 304.3 146 98.6
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 8.6e-81 303.5 146 96.6
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 1.2e-79 299.7 146 96.6
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 1.2e-79 299.7 146 96.6
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 4.9e-76 287.7 147 93.2
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 2.3e-73 278.9 147 88.4
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 1.1e-72 276.6 140 88.6
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.9e-72 275.8 139 89.2
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 4.3e-72 274.6 147 89.8
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 4.7e-71 271.2 140 89.3
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 2.4e-67 258.8 135 83.7
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 4.5e-61 238.0 154 70.1
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 8.1e-55 217.2 141 70.9
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 3.1e-54 215.3 143 69.9
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 6.9e-54 214.2 146 69.9
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 6.9e-54 214.2 139 70.5
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.2e-53 213.4 147 70.7
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.5e-53 213.0 139 69.8
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 5.8e-53 211.1 147 68.7
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.8e-53 211.1 139 69.1
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.8e-53 211.1 138 69.6
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 5.8e-53 211.1 135 70.4
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 7.6e-53 210.7 140 70.0
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 9.9e-53 210.3 118 78.8
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 9.9e-53 210.3 138 71.0
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 9.9e-53 210.3 141 68.8
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 1.3e-52 209.9 141 68.8
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 2.2e-52 209.1 141 68.1
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 2.2e-52 209.1 141 70.9
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 2.9e-52 208.8 135 69.6
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 3.8e-52 208.4 115 80.9
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 3.8e-52 208.4 142 66.9
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 6.4e-52 207.6 136 72.1
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 6.4e-52 207.6 143 67.1
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 1.1e-51 206.8 143 68.5
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 1.9e-51 206.1 144 68.8
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 3.2e-51 205.3 136 70.6
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 9.3e-51 203.8 144 66.7
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 1.2e-50 203.4 142 66.2
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 2.1e-50 202.6 117 73.5
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 2.7e-50 202.2 123 72.4
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 3.5e-50 201.8 136 69.1
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 3.5e-50 201.8 144 67.4
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 3.5e-50 201.8 147 65.3
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 6.0e-50 201.1 141 66.7
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 6.0e-50 201.1 148 65.5
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 7.9e-50 200.7 136 69.9
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 7.9e-50 200.7 144 66.7
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 7.9e-50 200.7 115 77.4
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 1.3e-49 199.9 136 69.9
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.8e-49 199.5 136 68.4
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 2.3e-49 199.1 135 67.4
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 2.3e-49 199.1 138 65.9
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 5.1e-49 198.0 136 67.6
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 5.1e-49 198.0 138 68.8
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 2.5e-48 195.7 135 65.9
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 2.5e-48 195.7 135 67.4
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 2.5e-48 195.7 136 66.9
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 2.5e-48 195.7 115 75.7
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 3.3e-48 195.3 118 74.6
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 4.3e-48 194.9 136 65.4
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 5.6e-48 194.5 135 67.4
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 5.6e-48 194.5 133 66.9
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 7.4e-48 194.1 136 64.7
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 7.4e-48 194.1 142 62.7
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 7.4e-48 194.1 115 72.2
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 7.4e-48 194.1 134 67.2
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.3e-47 193.4 135 65.2
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.6e-47 193.0 132 66.7
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 1.6e-47 193.0 136 66.9
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.1e-47 192.6 135 66.7
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 2.8e-47 192.2 136 66.9
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 2.8e-47 192.2 136 62.5
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 4.8e-47 191.4 119 72.3
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 1.4e-46 189.9 138 66.7
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 1.8e-46 189.5 129 65.9
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.4e-46 189.1 122 66.4
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 2.4e-46 189.1 138 64.5
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 2.4e-46 189.1 135 64.4
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 4.0e-46 188.3 120 67.5
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 5.3e-46 188.0 135 63.0
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 6.9e-46 187.6 122 65.6
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 6.9e-46 187.6 133 65.4
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 6.9e-46 187.6 122 70.5
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 9.0e-46 187.2 136 64.7
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 9.0e-46 187.2 136 64.7
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 5.8e-45 184.5 138 63.0
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 7.6e-45 184.1 125 62.4
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.8e-44 181.8 138 59.4
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 4.9e-44 181.4 134 61.2
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 6.5e-44 181.0 144 61.8
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.9e-43 179.5 144 55.6
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.9e-43 179.5 144 55.6
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 4.2e-43 178.3 165 53.9
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 7.1e-43 177.6 134 60.4
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.7e-42 175.6 109 71.6
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 4.6e-42 174.9 131 61.1
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 6.0e-42 174.5 131 61.8
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 6.9e-38 161.0 138 60.9
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 1.1e-32 143.7 119 59.7
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 3.3e-32 142.1 132 52.3
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 9.7e-32 140.6 81 76.5
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 9.7e-32 140.6 116 56.0
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 2.8e-31 139.0 81 75.3
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.2e-26 123.6 75 73.3
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 7.9e-26 120.9 114 45.6
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 5.1e-25 118.2 92 57.6
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 1.1e-24 117.1 92 56.5
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 2.0e-24 116.3 135 47.4
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 3.3e-24 115.5 96 51.0
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 4.8e-23 111.7 78 65.4
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 1.1e-22 110.5 89 51.7
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 1.5e-21 106.7 117 48.7
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 2.9e-20 102.4 93 45.2
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 6.5e-20 101.3 55 80.0
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 1.6e-18 96.7 141 42.6
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 3.6e-18 95.5 93 48.4
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 8.8e-17 90.9 99 40.4
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 1.1e-16 90.5 92 46.7
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.0e-12 77.4 67 52.2
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 8.5e-12 74.3 56 57.1
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 1.8e-09 66.6 41 70.7
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 7.5e-08 61.2 70 44.3
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.2e-07 59.7 66 47.0
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 6.3e-07 58.2 53 56.6
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 1.1e-06 57.4 39 64.1
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 1.8e-06 56.6 88 39.8


User provided reference genes

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