Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 7.4e-296 1020.0 601 100.0
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.9e-275 952.2 602 94.7
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 4.4e-248 861.3 608 87.2
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 7.5e-248 860.5 608 86.8
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 6.6e-236 820.8 618 83.0
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 3.3e-219 765.4 570 80.9
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 3.0e-172 609.4 531 72.1
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 5.2e-172 608.6 535 72.9
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 6.3e-170 601.7 531 70.2
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.8e-161 573.5 519 74.4
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 2.4e-161 573.2 522 73.8
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 3.4e-147 526.2 635 58.0
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 2.9e-146 523.1 614 58.6
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 7.0e-145 518.5 527 62.2
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.9e-142 510.4 638 58.0
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 2.1e-141 506.9 615 58.2
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 1.7e-135 487.3 623 56.0
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 2.8e-133 479.9 573 57.9
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.5e-131 474.2 634 59.5
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 2.6e-131 473.4 616 52.8
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 3.2e-129 466.5 626 53.8
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 3.9e-111 406.4 437 62.0
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 3.9e-95 353.2 520 51.7
Sp5g17020 Schrenkiella parvula HOM05D003739 ORTHO05D003996 4.9e-90 336.3 398 58.3
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.4e-81 308.1 288 63.5
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.1e-78 298.5 235 72.3
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.8e-71 274.6 575 39.3
BcaNung02354 Brassica carinata HOM05D003739 ORTHO05D003996 4.2e-57 226.9 373 51.5
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 2.7e-43 181.0 323 41.2
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 4.0e-39 167.2 190 48.9
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 4.0e-39 167.2 189 48.1
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 6.8e-39 166.4 279 40.5
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 1.2e-38 165.6 187 48.1
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 4.4e-38 163.7 280 38.6
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 1.7e-37 161.8 193 48.2
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 4.9e-37 160.2 283 39.6
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.1e-36 159.1 286 39.5
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.4e-36 158.7 187 46.5
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.1e-36 157.5 188 44.7
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 5.4e-36 156.8 281 39.9
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.5e-35 153.7 251 46.2
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 5.9e-35 153.3 275 38.5
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 1.7e-34 151.8 284 38.0
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 2.3e-34 151.4 187 46.0
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 2.9e-34 151.0 286 39.2
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 8.6e-34 149.4 281 38.4
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 3.3e-33 147.5 187 45.5
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 3.3e-33 147.5 284 38.7
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 4.3e-33 147.1 278 37.4
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 5.6e-33 146.7 280 37.1
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 7.3e-33 146.4 278 35.6
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 1.2e-32 145.6 276 37.7
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 2.8e-32 144.4 277 36.1
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 3.6e-32 144.1 192 41.7
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 4.7e-32 143.7 187 41.2
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.4e-31 142.1 263 36.9
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 1.8e-31 141.7 278 36.0
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 8.9e-31 139.4 190 43.2
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 8.9e-31 139.4 177 45.8
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 1.2e-30 139.0 276 36.2
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 2.0e-30 138.3 187 44.9
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 4.4e-30 137.1 186 41.9
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 4.4e-30 137.1 276 36.2
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 5.8e-30 136.7 291 35.4
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 7.5e-30 136.3 289 36.3
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 2.2e-29 134.8 192 43.8
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 2.9e-29 134.4 250 37.6
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 4.9e-29 133.7 273 39.9
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 6.4e-29 133.3 192 41.7
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 8.3e-29 132.9 284 35.6
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.1e-28 132.5 286 35.3
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 1.4e-28 132.1 278 35.6
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 1.4e-28 132.1 278 36.0
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.4e-28 131.3 283 35.7
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 3.2e-28 131.0 280 35.7
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 3.2e-28 131.0 278 36.0
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 3.2e-28 131.0 260 33.5
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 7.0e-28 129.8 281 36.3
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 7.0e-28 129.8 269 37.2
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 1.2e-27 129.0 290 35.5
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.6e-27 128.6 293 35.5
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 2.7e-27 127.9 277 36.5
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 3.5e-27 127.5 116 53.4
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 4.6e-27 127.1 353 29.5
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 7.8e-27 126.3 273 35.2
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 7.8e-27 126.3 280 33.9
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.3e-26 125.6 279 34.4
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.7e-26 125.2 195 40.5
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.3e-26 124.8 189 40.2
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.0e-26 124.4 281 34.2
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 3.9e-26 124.0 280 31.4
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 5.0e-26 123.6 277 35.0
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 5.0e-26 123.6 460 28.3
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 6.6e-26 123.2 195 39.0
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 6.6e-26 123.2 290 33.8
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 8.6e-26 122.9 198 37.9
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 1.1e-25 122.5 188 39.4
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 1.9e-25 121.7 288 35.8
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.9e-25 121.7 275 33.5
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 3.3e-25 120.9 168 42.3
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 3.3e-25 120.9 282 31.9
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 3.3e-25 120.9 188 37.2
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 5.6e-25 120.2 184 40.8
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 5.6e-25 120.2 188 39.9
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 6.2e-24 116.7 282 34.8
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.1e-23 115.9 283 31.1
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 1.4e-23 115.5 184 36.4
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 5.2e-23 113.6 309 33.0
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 2.0e-22 111.7 173 42.8
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 5.8e-22 110.2 290 31.4
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 7.5e-22 109.8 62 85.5
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.3e-21 109.0 238 34.0
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.9e-20 105.1 279 31.5
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 3.2e-20 104.4 93 51.6
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 2.1e-19 101.7 147 40.8
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 7.8e-19 99.8 183 37.2
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 1.0e-18 99.4 174 37.9
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 1.0e-18 99.4 179 34.1
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 2.3e-18 98.2 172 37.2
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 2.3e-18 98.2 171 38.0
CARHR106830 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.5e-17 95.5 110 58.2
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.5e-17 95.5 133 41.4
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 2.5e-17 94.7 270 31.5
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 4.3e-17 94.0 278 33.1
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 5.6e-17 93.6 279 29.0
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 1.2e-16 92.4 130 37.7
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.6e-16 92.0 92 44.6
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 3.6e-16 90.9 494 26.5
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 4.7e-16 90.5 434 26.5
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 4.0e-15 87.4 271 29.2
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 4.0e-15 87.4 127 40.2
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.0e-14 85.1 267 31.1
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 9.9e-14 82.8 92 42.4
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.7e-13 82.0 259 32.0
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 4.9e-13 80.5 86 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 4.9e-13 80.5 86 40.7
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 6.4e-13 80.1 168 32.1
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.3e-13 79.7 185 28.1
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.9e-12 78.6 184 31.5
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.9e-12 78.6 153 33.3
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 9.2e-12 76.3 93 37.6
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 5.1e-10 70.5 92 34.8
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 1.5e-09 68.9 54 64.8
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 4.3e-09 67.4 119 35.3
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.8e-07 62.0 127 34.6
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 1.8e-07 62.0 125 32.0
Thhalv10000433m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 2.4e-07 61.6 39 76.9
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 8.9e-07 59.7 163 34.4
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 1.5e-06 58.9 111 36.0
Hma1.2p1_0088F.1_g045220 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 2.6e-06 58.2 58 53.4
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.9e-06 56.2 268 25.4


User provided reference genes

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