Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 0.0e+00 2200.2 1220 100.0
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 2040.4 1233 91.6
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 2025.4 1230 91.9
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1913.7 1227 87.1
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1805.8 1252 79.8
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1748.8 1249 76.7
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1708.0 1231 75.5
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1691.4 1238 74.4
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1681.0 1240 74.2
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1663.3 1246 73.8
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1617.1 1238 70.9
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1548.1 1192 72.1
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1524.6 1101 74.8
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 0.0e+00 1523.8 1051 78.7
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1507.3 860 99.3
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1409.8 1259 62.4
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1161.7 1277 52.1
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1159.1 1253 52.8
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1154.4 1277 51.9
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1150.6 1163 54.9
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1138.6 1267 51.1
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1138.3 1267 54.0
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1124.4 1089 55.9
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1122.8 1269 50.7
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1119.4 1134 54.9
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1109.0 1267 50.1
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1108.6 1256 50.5
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1108.6 1269 50.7
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1104.4 1258 50.5
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1102.0 1256 50.4
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1091.3 1273 49.4
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1088.6 1270 50.9
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1085.5 1257 50.0
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1081.2 1273 50.2
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1075.5 1158 51.7
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 2.5e-311 1072.4 1257 49.6
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 7.5e-311 1070.8 1258 49.0
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 9.1e-309 1063.9 1158 52.3
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 3.8e-307 1058.5 1265 50.0
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 4.7e-305 1051.6 1280 48.3
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 1.0e-304 1050.4 1261 48.5
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 1.4e-304 1050.0 1276 47.8
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 2.0e-303 1046.2 1247 47.9
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 2.8e-302 1042.3 1225 49.2
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 9.1e-301 1037.3 1260 48.7
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 4.5e-300 1035.0 1261 50.3
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 5.9e-300 1034.6 1263 48.0
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 5.9e-300 1034.6 1262 47.7
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 2.9e-299 1032.3 1271 47.2
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 8.6e-299 1030.8 1276 47.7
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 8.0e-297 1024.2 1158 49.9
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 1.3e-294 1016.9 1182 50.2
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 6.3e-294 1014.6 1275 46.9
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 3.1e-293 1012.3 1283 46.8
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 9.2e-293 1010.7 1296 46.6
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 1.0e-291 1007.3 1261 48.1
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 1.3e-291 1006.9 1273 46.3
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 2.3e-291 1006.1 1140 49.7
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 4.3e-290 1001.9 1243 46.8
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 1.8e-288 996.5 1263 46.7
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 8.9e-288 994.2 1252 46.9
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.2e-287 993.8 1252 46.6
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 4.6e-284 981.9 1251 46.8
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 5.9e-284 981.5 1256 47.0
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 1.6e-281 973.4 1260 45.7
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 5.8e-279 964.9 1253 46.4
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 9.8e-279 964.1 1251 46.1
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 2.2e-278 963.0 1266 45.3
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 2.0e-276 956.4 1252 45.8
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 4.6e-276 955.3 1254 45.8
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 1.3e-275 953.7 1147 47.3
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 1.7e-275 953.4 1102 49.5
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 1.9e-274 949.9 1256 46.7
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 5.6e-274 948.3 1161 47.5
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 8.1e-273 944.5 1114 50.4
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 4.0e-272 942.2 1242 45.0
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 1.5e-271 940.3 1242 46.0
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 5.8e-271 938.3 1256 46.1
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 1.7e-270 936.8 1300 44.2
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 2.1e-268 929.9 1291 43.9
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 1.7e-267 926.8 1145 46.7
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 1.1e-264 917.5 1024 52.2
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 3.8e-262 909.1 1178 47.9
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 3.2e-261 906.0 1247 43.8
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 3.5e-260 902.5 864 58.7
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 6.0e-260 901.7 1257 42.8
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 1.1e-256 891.0 1246 43.4
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 6.9e-256 888.3 1247 43.5
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 1.7e-254 883.6 1144 46.4
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 1.6e-252 877.1 969 53.0
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 3.6e-249 865.9 908 55.3
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 2.6e-247 859.8 1258 43.7
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 6.5e-214 748.8 988 45.0
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 4.7e-196 689.5 1119 39.4
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 3.0e-195 686.8 993 44.2
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 2.5e-189 667.2 1266 35.1
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 9.8e-186 655.2 1108 38.0
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.4e-184 651.4 740 48.5
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 2.9e-182 643.7 901 42.7
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 7.5e-154 549.3 990 36.4
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 7.8e-151 539.3 748 41.0
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 2.5e-149 534.3 710 43.2
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 5.2e-147 526.6 783 40.0
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 4.4e-146 523.5 445 59.1
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 1.9e-136 491.5 753 39.4
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 3.2e-120 437.6 654 40.1
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 6.2e-116 423.3 428 54.9
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.8e-102 378.6 551 40.5
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 6.5e-89 333.6 236 69.1
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 3.2e-88 331.3 362 51.1
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 3.2e-80 304.7 292 55.8
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 1.2e-79 302.8 281 57.3
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 4.0e-78 297.7 281 56.9
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 5.3e-75 287.3 333 48.0
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.1e-72 279.6 467 39.6
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 1.6e-71 275.8 470 34.3
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 8.6e-65 253.4 665 31.0
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 1.5e-61 242.7 447 34.7
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-54 217.6 344 34.6
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 6.4e-52 210.7 376 38.3
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 3.0e-41 175.3 180 46.7
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 2.9e-36 158.7 404 29.7
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 4.6e-34 151.4 170 51.8
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.9e-27 129.4 265 34.3
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 3.0e-25 122.1 323 33.1
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 9.3e-19 100.5 347 28.0
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 1.3e-15 90.1 204 30.9
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 2.8e-15 89.0 144 36.1
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 4.0e-14 85.1 104 42.3
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 4.5e-13 81.6 101 41.6
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 1.3e-12 80.1 104 40.4
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 1.3e-12 80.1 149 35.6
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 8.7e-09 67.4 61 50.8


User provided reference genes

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