Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 1.7e-87 325.9 155 100.0
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 1.2e-85 319.7 155 99.4
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 1.2e-85 319.7 155 99.4
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 2.8e-85 318.5 155 98.7
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 3.4e-83 311.6 155 97.4
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 3.4e-83 311.6 155 97.4
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 3.4e-83 311.6 155 97.4
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 2.0e-75 285.8 156 87.8
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 3.4e-75 285.0 155 89.0
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 2.9e-74 282.0 154 87.0
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 1.2e-72 276.6 162 86.4
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 1.9e-70 269.2 160 82.5
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 1.8e-68 262.7 158 81.6
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 5.2e-68 261.2 149 84.6
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 3.2e-65 251.9 158 77.8
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 2.8e-61 238.8 145 79.3
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 6.2e-61 237.7 149 74.5
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 2.0e-59 232.6 155 72.9
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 2.0e-59 232.6 150 73.3
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 3.4e-59 231.9 155 71.6
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 3.4e-59 231.9 147 75.5
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 3.4e-59 231.9 156 73.1
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 4.4e-59 231.5 155 72.9
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 9.9e-59 230.3 155 72.3
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.3e-58 229.9 154 72.1
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.3e-58 229.9 155 71.6
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 2.9e-58 228.8 143 76.9
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 4.9e-58 228.0 147 74.8
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.1e-57 226.9 155 70.3
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.1e-57 226.9 155 71.0
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 5.4e-57 224.6 147 72.8
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 7.1e-57 224.2 144 75.0
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 1.2e-56 223.4 146 72.6
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 1.6e-56 223.0 154 71.4
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 2.7e-56 222.2 147 73.5
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 1.0e-55 220.3 156 68.6
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 1.7e-55 219.5 151 68.2
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 3.0e-55 218.8 147 70.7
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 6.6e-55 217.6 149 69.8
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 1.5e-54 216.5 146 71.2
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 1.5e-54 216.5 146 71.9
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 1.9e-54 216.1 152 70.4
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 3.3e-54 215.3 147 72.1
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 3.3e-54 215.3 147 72.1
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 3.3e-54 215.3 152 72.4
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 4.3e-54 214.9 152 69.1
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 7.3e-54 214.2 150 70.0
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 7.3e-54 214.2 159 65.4
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 9.5e-54 213.8 147 71.4
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 1.2e-53 213.4 132 76.5
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.2e-53 213.4 146 71.2
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 2.1e-53 212.6 144 72.2
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 2.8e-53 212.2 157 68.8
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 2.8e-53 212.2 147 71.4
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 8.1e-53 210.7 140 72.9
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 1.8e-52 209.5 156 65.4
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 1.8e-52 209.5 142 71.8
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.8e-52 209.5 155 68.4
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 3.1e-52 208.8 152 69.7
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 6.8e-52 207.6 152 69.7
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 6.8e-52 207.6 147 70.7
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 8.9e-52 207.2 144 70.8
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 1.5e-51 206.5 143 67.1
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 3.4e-51 205.3 152 65.1
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 3.4e-51 205.3 152 65.8
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 4.4e-51 204.9 144 68.8
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 4.4e-51 204.9 144 71.5
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 7.6e-51 204.1 153 68.0
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 9.9e-51 203.8 151 64.2
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 1.1e-49 200.3 146 65.1
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 1.4e-49 199.9 139 66.9
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 3.2e-49 198.7 143 71.3
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 3.2e-49 198.7 140 69.3
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 5.4e-49 198.0 144 68.1
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 1.2e-48 196.8 135 69.6
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 2.1e-48 196.1 144 65.3
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 2.7e-48 195.7 143 70.6
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 2.7e-48 195.7 151 63.6
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 3.9e-47 191.8 140 66.4
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 2.5e-46 189.1 147 63.9
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 4.3e-46 188.3 139 68.3
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 2.8e-45 185.7 140 70.7
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 1.8e-44 183.0 143 69.2
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 3.1e-44 182.2 153 62.1
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 4.0e-44 181.8 148 60.8
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 4.0e-44 181.8 148 60.8
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 2.0e-43 179.5 133 61.7
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 9.9e-43 177.2 141 64.5
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 2.2e-42 176.0 138 63.0
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 4.3e-38 161.8 135 54.8
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 5.6e-38 161.4 121 68.6
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 5.6e-38 161.4 139 56.1
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 1.6e-37 159.8 134 59.7
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 2.1e-37 159.5 108 70.4
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 1.1e-36 157.1 158 52.5
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 9.0e-36 154.1 135 54.8
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 2.6e-35 152.5 135 54.8
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 9.9e-35 150.6 152 52.6
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 8.4e-34 147.5 135 53.3
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 1.4e-33 146.7 149 51.7
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 7.9e-32 141.0 143 51.0
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 1.1e-30 137.1 110 64.5
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 1.4e-28 130.2 95 68.4
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 3.1e-28 129.0 146 46.6
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 2.0e-27 126.3 101 64.4
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 3.4e-27 125.6 98 66.3
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 7.9e-24 114.4 138 44.9
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 5.7e-22 108.2 81 69.1
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 2.5e-17 92.8 104 50.0
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 3.2e-17 92.4 165 38.2
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 6.1e-16 88.2 74 59.5
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 6.7e-15 84.7 158 35.4
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 6.9e-12 74.7 103 42.7


User provided reference genes

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