Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 9.6e-300 1032.7 520 100.0
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 3.0e-285 984.6 523 96.2
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 9.7e-252 873.2 527 86.0
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 3.7e-251 871.3 527 85.8
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 3.7e-251 871.3 527 85.8
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 3.1e-250 868.2 523 84.7
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 2.3e-245 852.0 527 82.9
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 1.6e-233 812.8 531 80.4
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 1.3e-227 793.1 526 80.2
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 1.3e-227 793.1 526 80.2
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 1.1e-226 790.0 527 80.5
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 9.2e-226 786.9 530 79.2
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 9.5e-223 776.9 528 79.4
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 1.2e-222 776.5 530 78.1
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 9.8e-220 766.9 528 78.8
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 4.9e-219 764.6 529 77.1
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 2.4e-218 762.3 529 77.3
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 9.8e-212 740.3 545 71.6
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 2.8e-190 669.1 529 67.5
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 1.7e-126 457.2 499 50.7
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 4.8e-126 455.7 460 53.9
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 5.4e-125 452.2 466 53.0
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 9.1e-125 451.4 497 50.9
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 3.5e-124 449.5 460 52.2
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 3.5e-124 449.5 460 52.2
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 3.8e-123 446.0 463 53.6
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 4.7e-121 439.1 538 47.2
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 1.5e-119 434.1 533 46.3
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 1.5e-119 434.1 460 49.6
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 3.4e-119 433.0 533 46.0
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 4.4e-119 432.6 469 48.8
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 1.7e-118 430.6 535 47.1
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 2.2e-118 430.3 526 47.3
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 2.8e-118 429.9 534 47.4
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 2.8e-118 429.9 522 48.1
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.1e-117 427.9 469 50.1
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 1.8e-117 427.2 459 51.2
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 4.1e-117 426.0 458 51.3
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 7.0e-117 425.2 463 49.7
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.0e-116 423.7 528 47.3
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 1.0e-115 421.4 515 47.0
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 1.3e-115 421.0 479 49.3
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 6.6e-115 418.7 460 49.3
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 8.6e-115 418.3 535 46.2
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 5.6e-114 415.6 532 44.9
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 9.5e-114 414.8 459 50.8
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 2.3e-112 410.2 462 50.0
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 4.0e-112 409.5 493 48.3
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 1.5e-111 407.5 455 50.3
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.4e-111 406.4 501 46.9
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.3e-110 404.4 475 47.2
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.4e-109 400.2 581 43.0
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 9.2e-109 398.3 466 48.1
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 1.6e-108 397.5 460 48.5
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 1.6e-108 397.5 538 44.4
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 1.0e-107 394.8 431 51.3
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 1.3e-107 394.4 450 49.3
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 2.3e-107 393.7 493 46.2
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 3.9e-107 392.9 497 45.5
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 1.1e-106 391.3 456 47.8
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 1.9e-106 390.6 461 46.9
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 1.6e-105 387.5 469 46.7
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.6e-105 387.5 496 45.0
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 2.8e-105 386.7 528 45.8
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 2.8e-105 386.7 460 47.4
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 4.7e-105 386.0 495 45.7
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 8.0e-105 385.2 489 44.2
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.8e-104 384.0 488 44.7
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 2.3e-104 383.6 485 44.1
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 6.8e-104 382.1 471 46.9
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 6.8e-104 382.1 455 46.2
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 6.4e-102 375.6 460 46.7
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 2.4e-101 373.6 460 46.7
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 3.2e-101 373.2 455 45.5
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 4.1e-101 372.9 511 43.4
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 7.0e-101 372.1 538 43.3
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 2.0e-100 370.5 530 43.4
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 2.7e-100 370.2 457 46.2
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 4.6e-100 369.4 531 41.1
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 7.8e-100 368.6 456 45.8
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.5e-98 364.4 470 45.1
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 2.5e-98 363.6 473 44.0
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 6.2e-97 359.0 534 42.5
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.4e-96 357.8 534 41.4
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 3.1e-96 356.7 456 46.1
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 8.9e-96 355.1 398 49.0
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 1.3e-94 351.3 581 38.9
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 2.2e-94 350.5 366 51.4
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 2.1e-92 344.0 525 43.0
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 4.6e-92 342.8 457 45.3
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 3.9e-91 339.7 381 48.3
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 3.3e-90 336.7 508 41.5
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 6.4e-86 322.4 389 45.0
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 2.1e-84 317.4 465 41.5
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 1.1e-80 305.1 497 40.4
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 1.7e-78 297.7 405 43.0
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.1e-74 285.0 460 38.7
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.5e-74 283.9 320 50.9
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.2e-71 275.0 214 68.2
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 1.3e-70 271.6 384 42.7
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 2.9e-70 270.4 465 35.9
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 3.5e-60 236.9 493 34.3
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 2.2e-54 217.6 315 42.2
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 1.1e-53 215.3 192 60.9
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 2.1e-52 211.1 499 30.1
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 9.0e-48 195.7 468 32.3
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 9.0e-48 195.7 145 72.4
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 1.7e-46 191.4 477 30.2
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.8e-46 190.3 298 41.3
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 7.9e-44 182.6 446 30.5
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.8e-43 181.4 298 37.2
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 2.3e-43 181.0 145 65.5
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 1.8e-40 171.4 214 45.3
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.4e-40 171.0 320 35.6
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 9.1e-32 142.5 144 50.0
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.4e-31 140.6 185 44.3
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 5.0e-30 136.7 121 58.7
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.1e-29 135.6 128 60.2
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 9.1e-24 115.9 244 32.4
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 7.7e-23 112.8 181 35.9
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.7e-17 95.1 141 38.3
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 1.5e-13 82.0 196 28.6
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 2.5e-13 81.3 68 52.9
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 1.5e-10 72.0 110 40.0
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 3.5e-07 60.8 155 29.7
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 4.5e-07 60.5 67 44.8
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 4.5e-07 60.5 94 38.3


User provided reference genes

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