Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA06t26504Z Brassica rapa HOM05D004120 ORTHO05D033838 1.8e-19 98.2 48 100.0
BraA06t25439Z Brassica rapa HOM05D000888 ORTHO05D033838 2.3e-14 81.3 44 90.9
BolC3t19261H Brassica oleracea HOM05D000888 ORTHO05D033838 6.7e-14 79.7 44 86.4
C03p70000 Brassica napus HOM05D000888 ORTHO05D000740 3.3e-13 77.4 44 84.1
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 2.7e-07 57.8 29 89.7
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 3.5e-07 57.4 29 86.2
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 6.0e-07 56.6 44 68.2
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 6.0e-07 56.6 29 86.2
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 7.9e-07 56.2 29 86.2
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 7.9e-07 56.2 26 100.0
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 7.9e-07 56.2 29 86.2
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 7.9e-07 56.2 26 100.0
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 7.9e-07 56.2 29 86.2
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 7.9e-07 56.2 29 86.2
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 7.9e-07 56.2 26 100.0
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 7.9e-07 56.2 29 86.2
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 1.0e-06 55.8 29 82.8
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 86.2
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.3e-06 55.5 28 89.3
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 1.3e-06 55.5 29 82.8
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.8e-06 55.1 29 82.8
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.8e-06 55.1 29 82.8
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 1.8e-06 55.1 26 96.2
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 1.8e-06 55.1 29 82.8
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 2.3e-06 54.7 29 82.8
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 2.3e-06 54.7 29 82.8
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 2.3e-06 54.7 29 79.3
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.3e-06 54.7 29 82.8
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.3e-06 54.7 29 82.8
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 3.0e-06 54.3 28 85.7
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 3.9e-06 53.9 26 92.3
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 3.9e-06 53.9 26 92.3
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 3.9e-06 53.9 28 85.7
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 79.3
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 5.1e-06 53.5 50 60.0
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 5.1e-06 53.5 29 82.8
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 5.1e-06 53.5 42 71.4
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 5.1e-06 53.5 28 85.7
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 6.7e-06 53.1 29 79.3
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 6.7e-06 53.1 29 79.3
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 6.7e-06 53.1 29 79.3
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 8.7e-06 52.8 28 82.1
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 8.7e-06 52.8 28 82.1
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 8.7e-06 52.8 29 79.3
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 8.7e-06 52.8 26 88.5
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 8.7e-06 52.8 28 82.1
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 8.7e-06 52.8 28 82.1
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 8.7e-06 52.8 28 82.1
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 8.7e-06 52.8 28 82.1
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 8.7e-06 52.8 28 82.1
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 8.7e-06 52.8 28 82.1
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 8.7e-06 52.8 28 82.1
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 8.7e-06 52.8 28 82.1
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 8.7e-06 52.8 28 82.1
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 8.7e-06 52.8 28 82.1
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 8.7e-06 52.8 29 82.8
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 8.7e-06 52.8 29 82.8


User provided reference genes

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