Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 1.6e-120 437.6 593 100.0
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 2.2e-114 417.2 591 98.6
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 2.7e-112 410.2 592 97.1
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 1.6e-109 401.0 593 96.6
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 1.8e-92 344.4 592 92.2
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 3.2e-81 307.0 290 85.5
Carub.0006s2268 Capsella rubella HOM05D000880 ORTHO05D009684 7.3e-78 295.8 292 82.5
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 2.4e-76 290.8 292 83.6
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 1.3e-74 285.0 290 82.4
AL6G36470 Arabidopsis lyrata HOM05D000880 ORTHO05D009684 4.9e-74 283.1 290 81.7
BcaNung01260 Brassica carinata HOM05D000880 ORTHO05D009684 2.8e-69 267.3 160 84.4
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 2.6e-51 207.6 317 62.5
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 2.1e-48 198.0 321 66.4
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 9.7e-30 136.0 303 55.8
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 7.7e-27 126.3 304 53.0
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 1.3e-26 125.6 302 54.0
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 3.8e-26 124.0 297 56.6
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 3.8e-26 124.0 307 54.7
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 5.0e-26 123.6 300 57.7
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 6.5e-26 123.2 307 54.1
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 3.2e-25 120.9 316 54.4
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 7.9e-24 116.3 297 52.9
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 1.1e-22 112.5 300 51.7
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 5.7e-22 110.2 292 53.8
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 1.3e-21 109.0 306 51.6
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 1.3e-21 109.0 252 59.5
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 2.2e-21 108.2 310 51.3
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 2.8e-21 107.8 300 53.3
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 3.7e-21 107.5 304 52.6
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 4.8e-21 107.1 305 52.1
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 6.3e-21 106.7 306 51.6
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 8.2e-21 106.3 302 51.7
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 1.4e-20 105.5 240 60.8
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.4e-20 105.5 306 53.3
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.4e-20 105.5 307 53.1
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 9.1e-20 102.8 304 52.3
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 1.2e-19 102.4 310 53.5
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 1.5e-19 102.1 293 52.9
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 1.5e-19 102.1 304 52.3
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 1.5e-19 102.1 177 37.3
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 2.0e-19 101.7 300 51.3
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 2.0e-19 101.7 302 50.3
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 2.6e-19 101.3 311 50.5
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 7.7e-19 99.8 240 57.9
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 5.0e-18 97.1 304 51.3
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 4.2e-17 94.0 178 36.0
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 5.5e-17 93.6 216 65.7
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 7.2e-17 93.2 271 50.9
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.8e-15 88.6 238 60.1
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 3.9e-15 87.4 238 60.1
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 1.1e-14 85.9 297 50.2
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 7.4e-14 83.2 294 51.0
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 1.1e-12 79.3 287 51.2
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 1.8e-12 78.6 268 55.2
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 1.8e-12 78.6 223 53.4
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 1.8e-12 78.6 238 56.3
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 3.1e-12 77.8 163 35.0
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 3.1e-12 77.8 299 48.8
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 7.0e-12 76.6 292 50.3
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 2.0e-11 75.1 211 54.5
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 2.0e-11 75.1 304 43.1
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 2.6e-11 74.7 192 66.7
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 1.0e-10 72.8 226 58.4
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 1.3e-10 72.4 269 44.6
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 1.7e-10 72.0 168 72.0
BcaB02g09816 Brassica carinata HOM05D000880 ORTHO05D009684 2.2e-10 71.6 43 86.0
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 2.2e-10 71.6 313 36.1
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 2.2e-10 71.6 105 41.0
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 2.2e-10 71.6 151 33.1
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 3.8e-10 70.9 292 50.0
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 6.5e-10 70.1 302 45.4
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 8.5e-10 69.7 91 45.1
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 8.5e-10 69.7 106 35.8
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 2.5e-09 68.2 175 29.1
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 3.2e-09 67.8 269 44.6
MD15G1110300 Malus domestica HOM05D000880 ORTHO05D009684 5.5e-09 67.0 189 62.4
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 7.2e-09 66.6 292 49.0
Peaxi162Scf00288g01016 Petunia axillaris HOM05D000880 ORTHO05D009684 7.2e-09 66.6 225 59.6
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 7.2e-09 66.6 219 58.4
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 7.2e-09 66.6 292 49.3
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 1.0e-07 62.8 86 38.4
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 1.4e-07 62.4 228 58.3
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 1.8e-07 62.0 105 34.3
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 1.8e-07 62.0 150 29.3
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 2.3e-07 61.6 223 58.7
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 2.6e-06 58.2 86 36.0
Glyma.15G236000 Glycine max HOM05D000880 ORTHO05D009684 2.6e-06 58.2 173 55.5
PSO017G1147 Papaver somniferum HOM05D000880 ORTHO05D001950 5.7e-06 57.0 143 28.7


User provided reference genes

Program Settings