Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 7.3e-41 170.2 94 100.0
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 7.3e-41 170.2 94 100.0
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 4.8e-40 167.5 94 97.9
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 4.8e-40 167.5 94 97.9
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 4.8e-40 167.5 94 97.9
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 3.8e-37 157.9 94 91.5
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 3.8e-37 157.9 97 91.8
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 6.4e-37 157.1 97 91.8
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.1e-35 152.1 95 90.5
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 4.6e-35 151.0 95 89.5
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 6.0e-35 150.6 88 92.0
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 3.9e-34 147.9 100 86.0
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 3.9e-34 147.9 100 86.0
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 8.7e-34 146.7 100 85.0
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 8.7e-34 146.7 100 85.0
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.5e-33 146.0 94 87.2
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 9.6e-33 143.3 94 86.2
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.6e-32 142.5 88 87.5
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 2.4e-31 138.7 97 85.6
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.0e-30 135.6 92 81.5
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 3.4e-30 134.8 90 78.9
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 1.3e-29 132.9 90 78.9
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 2.2e-29 132.1 91 79.1
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 6.4e-29 130.6 90 76.7
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 6.4e-29 130.6 90 76.7
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 6.4e-29 130.6 90 76.7
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 8.4e-29 130.2 90 75.6
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 3.0e-26 121.7 85 74.1
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 8.7e-26 120.2 92 68.5
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.5e-25 119.4 90 71.1
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 4.3e-25 117.9 92 68.5
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.6e-24 115.9 92 67.4
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 1.6e-24 115.9 79 79.7
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 3.7e-24 114.8 92 66.3
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.4e-23 112.8 92 63.0
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 1.8e-23 112.5 92 64.1
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 4.0e-23 111.3 75 78.7
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 6.9e-23 110.5 85 68.2
A02p40150 Brassica napus HOM05D003381 ORTHO05D003880 1.5e-22 109.4 68 91.2
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 2.2e-21 105.5 83 67.5
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 2.2e-21 105.5 83 67.5
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 7.9e-19 97.1 62 82.3
Aa31LG4G18060 Aethionema arabicum HOM05D003381 ORTHO05D003880 2.3e-18 95.5 85 63.5
AT3G49580 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.2e-13 79.0 67 64.2
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 2.9e-13 78.6 78 59.0
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 8.5e-13 77.0 78 53.8
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 8.5e-13 77.0 78 53.8
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 2.5e-12 75.5 94 47.9
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 4.2e-12 74.7 80 53.8
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 4.2e-12 74.7 73 57.5
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 7.2e-12 73.9 88 51.1
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 7.2e-12 73.9 86 50.0
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 1.2e-11 73.2 77 50.6
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.2e-11 73.2 76 57.9
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 2.1e-11 72.4 92 47.8
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.1e-11 72.4 83 53.0
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 2.7e-11 72.0 92 47.8
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 3.6e-11 71.6 81 49.4
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.6e-11 71.6 83 54.2
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.6e-11 71.2 80 51.2
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 6.1e-11 70.9 78 48.7
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 6.1e-11 70.9 74 55.4
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 6.1e-11 70.9 74 55.4
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 6.1e-11 70.9 76 53.9
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.0e-10 70.1 94 45.7
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.4e-10 69.7 82 51.2
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 1.4e-10 69.7 96 45.8
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.4e-10 69.7 84 48.8
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 1.8e-10 69.3 86 47.7
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 1.8e-10 69.3 84 48.8
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 1.8e-10 69.3 74 54.1
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 1.8e-10 69.3 80 51.2
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 2.3e-10 68.9 69 55.1
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 2.3e-10 68.9 78 50.0
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.3e-10 68.9 80 51.2
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.0e-10 68.6 73 50.7
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 3.9e-10 68.2 75 49.3
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 3.9e-10 68.2 73 53.4
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 6.7e-10 67.4 68 54.4
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 8.8e-10 67.0 77 49.4
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.1e-09 66.6 91 44.0
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 1.1e-09 66.6 78 50.0
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 1.1e-09 66.6 78 47.4
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 1.1e-09 66.6 75 48.0
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.5e-09 66.2 96 49.0
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 1.5e-09 66.2 52 59.6
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 2.0e-09 65.9 74 52.7
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 2.0e-09 65.9 79 48.1
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 2.0e-09 65.9 79 48.1
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 2.0e-09 65.9 82 48.8
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 2.0e-09 65.9 83 50.6
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 2.0e-09 65.9 100 48.0
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 2.0e-09 65.9 84 45.2
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.5e-09 65.5 53 62.3
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 2.5e-09 65.5 76 53.9
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.3e-09 65.1 80 48.8
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 4.3e-09 64.7 82 47.6
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 5.7e-09 64.3 69 50.7
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 5.7e-09 64.3 78 46.2
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 5.7e-09 64.3 80 50.0
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 5.7e-09 64.3 80 50.0
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 5.7e-09 64.3 80 50.0
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 7.4e-09 63.9 77 53.2
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 7.4e-09 63.9 74 48.6
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 7.4e-09 63.9 86 50.0
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 7.4e-09 63.9 69 53.6
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 9.7e-09 63.5 84 47.6
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 9.7e-09 63.5 81 44.4
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 9.7e-09 63.5 69 52.2
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 9.7e-09 63.5 69 52.2
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 9.7e-09 63.5 83 51.8
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 9.7e-09 63.5 83 51.8
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 1.3e-08 63.2 52 59.6
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 1.3e-08 63.2 46 65.2
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.3e-08 63.2 75 52.0
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.7e-08 62.8 82 42.7
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 2.2e-08 62.4 78 48.7
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.8e-08 62.0 86 48.8
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 2.8e-08 62.0 86 48.8
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.8e-08 62.0 80 47.5
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 2.8e-08 62.0 80 47.5
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 3.7e-08 61.6 90 47.8
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.7e-08 61.6 85 43.5
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.7e-08 61.6 73 47.9
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.7e-08 61.6 69 50.7
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 6.3e-08 60.8 73 50.7
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 6.3e-08 60.8 69 50.7
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 6.3e-08 60.8 91 44.0
SpUn0007_0020 Schrenkiella parvula HOM05D003381 ORTHO05D372657 6.3e-08 60.8 34 94.1
Zm00001eb231110 Zea mays HOM05D003381 ORTHO05D003880 6.3e-08 60.8 73 49.3
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 8.2e-08 60.5 72 48.6
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 8.2e-08 60.5 78 46.2
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.1e-07 60.1 76 47.4
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.4e-07 59.7 68 52.9
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 1.4e-07 59.7 86 43.0
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 2.4e-07 58.9 54 50.0
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 2.4e-07 58.9 80 48.8
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.4e-07 58.9 80 48.8
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.1e-07 58.2 68 48.5
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 4.1e-07 58.2 81 46.9
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 4.1e-07 58.2 52 57.7
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 5.3e-07 57.8 79 40.5
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.3e-07 57.8 80 47.5
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 5.3e-07 57.8 82 42.7
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 5.3e-07 57.8 75 48.0
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 6.9e-07 57.4 74 47.3
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 6.9e-07 57.4 94 44.7
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 6.9e-07 57.4 78 47.4
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 9.1e-07 57.0 43 69.8
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 9.1e-07 57.0 54 51.9
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 9.1e-07 57.0 74 47.3
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 1.2e-06 56.6 75 41.3
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 1.5e-06 56.2 82 40.2
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.5e-06 56.2 80 46.2
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 2.0e-06 55.8 89 46.1
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 2.0e-06 55.8 78 42.3
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 2.0e-06 55.8 107 42.1
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 2.0e-06 55.8 75 46.7
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.6e-06 55.5 73 43.8
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.6e-06 55.5 80 45.0
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 3.4e-06 55.1 76 48.7
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.4e-06 55.1 90 43.3
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 4.5e-06 54.7 74 47.3
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 5.9e-06 54.3 89 39.3
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 5.9e-06 54.3 82 43.9
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 5.9e-06 54.3 49 57.1
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 5.9e-06 54.3 78 44.9
Os02g0129800 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 7.7e-06 53.9 81 44.4
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 7.7e-06 53.9 78 46.2


User provided reference genes

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