Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 3.4e-155 551.6 275 100.0
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 3.8e-154 548.1 275 99.6
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.9e-153 545.8 275 98.9
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.9e-153 545.8 275 98.9
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 6.1e-152 540.8 275 98.2
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 8.0e-128 460.7 284 85.2
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 3.3e-126 455.3 273 85.3
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.5e-113 413.3 285 78.6
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 2.5e-113 412.5 287 77.7
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 4.7e-96 355.1 292 69.5
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 5.2e-95 351.7 285 69.5
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 3.4e-94 349.0 287 69.7
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 2.5e-89 332.8 288 66.7
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 9.9e-70 267.7 292 54.1
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.2e-67 260.8 299 56.9
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 2.1e-67 260.0 291 52.2
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 4.3e-65 252.3 280 56.1
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.8e-63 246.9 291 51.2
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 2.0e-62 243.4 292 52.1
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 7.1e-60 235.0 281 50.2
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 9.3e-60 234.6 291 49.1
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.6e-59 233.8 281 50.5
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 7.9e-59 231.5 281 50.2
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 5.6e-57 225.3 265 50.6
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 1.6e-56 223.8 125 92.0
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 8.1e-56 221.5 292 48.3
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 8.1e-56 221.5 292 48.3
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 8.1e-56 221.5 327 44.6
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.1e-55 221.1 290 46.6
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.4e-55 219.9 268 50.0
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.2e-54 217.6 268 49.3
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 2.0e-54 216.9 287 48.1
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 3.4e-54 216.1 292 45.9
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 7.6e-54 214.9 292 45.5
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 7.6e-54 214.9 267 48.7
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.9e-53 213.0 290 45.9
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.9e-53 212.2 268 48.5
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 8.4e-53 211.5 297 44.8
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.9e-52 210.3 291 46.4
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 7.1e-52 208.4 291 44.7
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 9.3e-52 208.0 301 42.2
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 2.1e-51 206.8 293 45.7
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 6.7e-50 201.8 295 42.4
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 2.5e-49 199.9 299 43.8
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 4.3e-49 199.1 210 54.8
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 5.6e-49 198.7 295 42.7
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.7e-48 196.1 294 43.2
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 6.2e-48 195.3 290 43.1
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 6.2e-48 195.3 294 45.2
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.8e-47 193.7 323 40.9
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.8e-47 193.7 323 40.9
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 5.3e-47 192.2 296 44.3
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 1.2e-46 191.0 284 44.4
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 2.0e-46 190.3 303 42.9
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 5.8e-46 188.7 287 43.9
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 1.7e-45 187.2 286 42.7
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 2.9e-45 186.4 277 45.8
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 1.4e-44 184.1 229 47.6
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.9e-44 183.7 211 53.6
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 7.1e-44 181.8 287 42.9
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.3e-44 181.4 268 44.4
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 3.5e-43 179.5 289 41.9
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.0e-42 177.9 279 40.1
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 8.7e-42 174.9 290 40.0
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 8.7e-42 174.9 257 44.4
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 4.3e-41 172.6 294 40.1
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 1.3e-40 171.0 292 40.4
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 6.3e-40 168.7 243 44.9
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.1e-39 167.9 244 44.3
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.4e-39 167.5 249 43.8
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 4.1e-39 166.0 296 40.9
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 5.3e-39 165.6 292 40.4
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 6.9e-39 165.2 292 38.7
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 9.0e-39 164.9 293 40.3
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.2e-38 164.5 345 38.6
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.5e-38 164.1 293 40.3
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.3e-37 161.0 213 46.0
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.3e-37 161.0 293 38.6
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.3e-37 161.0 212 47.2
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.4e-36 157.5 390 33.8
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.5e-36 156.8 283 38.2
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 3.2e-36 156.4 315 34.9
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 1.2e-35 154.5 295 39.0
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.0e-34 151.4 403 32.3
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 6.7e-34 148.7 269 39.4
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.1e-33 147.9 224 42.9
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.9e-33 147.1 287 39.7
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 3.3e-33 146.4 244 41.4
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 4.3e-33 146.0 301 37.2
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 5.7e-33 145.6 273 39.2
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 7.4e-33 145.2 286 37.4
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.2e-32 143.7 273 39.2
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.8e-32 142.5 277 38.6
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.4e-31 141.0 237 40.5
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 2.6e-30 136.7 287 35.5
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 4.5e-30 136.0 282 34.8
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.7e-29 134.0 210 41.0
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 2.2e-29 133.7 250 38.8
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 2.2e-29 133.7 163 49.7
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 6.5e-29 132.1 189 43.4
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 3.2e-28 129.8 291 35.4
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 3.2e-28 129.8 289 35.6
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 4.2e-28 129.4 275 34.2
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 1.0e-26 124.8 298 31.9
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.5e-25 120.9 268 37.3
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.0e-25 120.6 251 37.1
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 2.5e-25 120.2 180 43.9
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 4.3e-25 119.4 304 33.6
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 7.4e-25 118.6 258 33.3
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 3.7e-24 116.3 213 39.4
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 9.1e-23 111.7 252 33.7
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 2.6e-22 110.2 161 44.1
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 3.4e-22 109.8 330 31.5
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 7.7e-22 108.6 298 31.5
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.0e-21 108.2 250 33.2
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.3e-21 107.8 217 38.7
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 1.7e-21 107.5 331 30.8
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.2e-19 101.3 241 33.6
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 6.1e-19 99.0 271 32.8
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 6.1e-19 99.0 368 27.7
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 6.1e-19 99.0 149 41.6
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.0e-18 98.2 123 46.3
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 5.1e-18 95.9 225 35.1
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 1.7e-16 90.9 157 40.8
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.8e-16 90.1 297 32.0
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.1e-15 88.2 281 29.2
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 9.1e-15 85.1 217 32.3
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.0e-13 81.6 143 35.0
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.0e-13 81.6 283 30.0
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.0e-13 81.6 129 38.0
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.3e-13 81.3 211 31.8
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.2e-13 80.5 211 31.3
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 2.2e-13 80.5 224 30.8
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 8.5e-13 78.6 190 33.7
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 7.2e-12 75.5 244 28.3
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 7.2e-12 75.5 145 35.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.6e-11 74.3 183 33.3
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 1.4e-10 71.2 83 51.8
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 4.1e-07 59.7 231 29.0
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.2e-06 58.2 81 40.7
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 1.6e-06 57.8 66 43.9


User provided reference genes

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