Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA03t10347Z Brassica rapa HOM05D007267 ORTHO05D009053 6.8e-60 233.8 118 100.0
A03p10350 Brassica napus HOM05D007267 ORTHO05D009053 3.4e-59 231.5 118 99.2
BolC3t13659H Brassica oleracea HOM05D007267 ORTHO05D009053 3.2e-57 224.9 118 95.8
BcaNung05756 Brassica carinata HOM05D007267 ORTHO05D009053 2.0e-56 222.2 118 95.8
C03p11890 Brassica napus HOM05D007267 ORTHO05D009053 2.0e-56 222.2 118 95.8
Carub.0006s1925 Capsella rubella HOM05D007267 ORTHO05D009053 6.2e-53 210.7 117 90.6
Thhalv10015046m.g Eutrema salsugineum HOM05D007267 ORTHO05D009053 2.0e-51 205.7 118 89.0
C02p10530 Brassica napus HOM05D007267 ORTHO05D009053 2.2e-50 202.2 118 89.0
BraA02t05605Z Brassica rapa HOM05D007267 ORTHO05D009053 2.2e-50 202.2 118 89.0
BcaC03g13815 Brassica carinata HOM05D007267 ORTHO05D009053 2.9e-50 201.8 118 89.8
BolC2t07084H Brassica oleracea HOM05D007267 ORTHO05D009053 8.3e-50 200.3 118 89.8
BcaB05g22800 Brassica carinata HOM05D007267 ORTHO05D009053 1.9e-49 199.1 118 88.1
AT5G20935 Arabidopsis thaliana HOM05D007267 ORTHO05D009053 2.4e-49 198.7 117 86.3
CARHR191910 Cardamine hirsuta HOM05D007267 ORTHO05D009053 6.0e-48 194.1 110 87.3
AL6G32500 Arabidopsis lyrata HOM05D007267 ORTHO05D009053 1.9e-46 189.1 103 89.3
Aa31LG1G13830 Aethionema arabicum HOM05D007267 ORTHO05D009053 1.3e-39 166.4 103 81.6
Gorai.007G016000 Gossypium raimondii HOM05D007267 ORTHO05D009053 6.0e-32 141.0 86 77.9
FAN21G3895 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.0e-31 140.2 91 74.7
Gohir.D11G012400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 1.0e-31 140.2 86 77.9
COL.COLO4_25353 Corchorus olitorius HOM05D007267 ORTHO05D009053 1.7e-31 139.4 98 69.4
Duzib170G0076 Durio zibethinus HOM05D007267 ORTHO05D009053 1.7e-31 139.4 95 71.6
Prupe.6G149700 Prunus persica HOM05D007267 ORTHO05D009053 3.0e-31 138.7 96 72.9
FvH4_3g26950 Fragaria vesca HOM05D007267 ORTHO05D009053 5.1e-31 137.9 91 73.6
FAN16G2508 Fragaria x ananassa HOM05D007267 ORTHO05D009053 6.6e-31 137.5 91 72.5
Glyma.07G213600 Glycine max HOM05D007267 ORTHO05D009053 6.6e-31 137.5 84 76.2
Cfa019700 Carpinus fangiana HOM05D007267 ORTHO05D009053 8.6e-31 137.1 101 66.3
Cfa019701 Carpinus fangiana HOM05D007267 ORTHO05D009053 8.6e-31 137.1 101 66.3
Glyma.02G102300 Glycine max HOM05D007267 ORTHO05D009053 1.1e-30 136.7 90 73.3
Ciclev10029598m.g Citrus clementina HOM05D007267 ORTHO05D009053 1.5e-30 136.3 120 60.0
QL03p058144 Quercus lobata HOM05D007267 ORTHO05D009053 1.9e-30 136.0 90 72.2
FAN25G2009 Fragaria x ananassa HOM05D007267 ORTHO05D009053 2.5e-30 135.6 91 72.5
HanXRQChr09g0268081 Helianthus annuus HOM05D007267 ORTHO05D009053 2.5e-30 135.6 113 63.7
CiPaw.13G125300 Carya illinoinensis HOM05D007267 ORTHO05D009053 3.3e-30 135.2 100 68.0
MELO3C014688.2 Cucumis melo HOM05D007267 ORTHO05D009053 4.3e-30 134.8 134 51.5
Haze_02482 Corylus avellana HOM05D007267 ORTHO05D009053 5.6e-30 134.4 97 67.0
Dinv32141 Davidia involucrata HOM05D007267 ORTHO05D009053 5.6e-30 134.4 75 82.7
ClCG02G024060 Citrullus lanatus HOM05D007267 ORTHO05D009053 7.3e-30 134.0 97 62.9
Thecc.09G267200 Theobroma cacao HOM05D007267 ORTHO05D009053 9.6e-30 133.7 120 58.3
MSTRG.12404 Avicennia marina HOM05D007267 ORTHO05D009053 1.2e-29 133.3 128 54.7
Medtr3g079820 Medicago truncatula HOM05D007267 ORTHO05D009053 1.2e-29 133.3 114 62.3
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 1.2e-29 133.3 129 56.6
THA.LOC104799596 Tarenaya hassleriana HOM05D007267 ORTHO05D009053 1.2e-29 133.3 81 81.5
MD03G1161500 Malus domestica HOM05D007267 ORTHO05D009053 1.6e-29 132.9 132 56.8
RcHm_v2.0_Chr5g0049391 Rosa chinensis HOM05D007267 ORTHO05D009053 1.6e-29 132.9 126 59.5
TPR.G15594 Trifolium pratense HOM05D007267 ORTHO05D009053 1.6e-29 132.9 95 71.6
Atru.chr3.3040 Acer truncatum HOM05D007267 ORTHO05D009053 2.1e-29 132.5 89 68.5
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 2.1e-29 132.5 95 70.5
CsaV3_4G023270 Cucumis sativus L. HOM05D007267 ORTHO05D009053 2.1e-29 132.5 98 62.2
Peaxi162Scf00345g00617 Petunia axillaris HOM05D007267 ORTHO05D009053 3.6e-29 131.7 123 61.0
Psat5g107600 Pisum sativum HOM05D007267 ORTHO05D009053 4.7e-29 131.3 73 83.6
Lj6g0001809 Lotus japonicus HOM05D007267 ORTHO05D009053 8.1e-29 130.6 126 60.3
Lalb_Chr17g0347461 Lupinus albus HOM05D007267 ORTHO05D009053 8.1e-29 130.6 73 82.2
Cc05_g03630 Coffea canephora HOM05D007267 ORTHO05D009053 1.1e-28 130.2 71 84.5
Hma1.2p1_0218F.1_g092330 Hydrangea macrophylla HOM05D007267 ORTHO05D009053 1.1e-28 130.2 72 81.9
vmacro14300 Vaccinium macrocarpon HOM05D007267 ORTHO05D009053 1.1e-28 130.2 101 63.4
Phvul.006G014400 Phaseolus vulgaris HOM05D007267 ORTHO05D009053 1.4e-28 129.8 89 68.5
arahy.Tifrunner.gnm1.ann1.YII7CZ Arachis hypogaea HOM05D007267 ORTHO05D009053 1.8e-28 129.4 73 82.2
arahy.Tifrunner.gnm1.ann1.NLVX9W Arachis hypogaea HOM05D007267 ORTHO05D009053 2.4e-28 129.0 129 58.1
EL10Ac7g16252 Beta vulgaris HOM05D007267 ORTHO05D009053 2.4e-28 129.0 84 73.8
GSVIVG01037512001 Vitis vinifera HOM05D007267 ORTHO05D009053 3.1e-28 128.6 94 66.0
Actinidia22464 Actinidia chinensis HOM05D007267 ORTHO05D009053 4.0e-28 128.3 75 78.7
CANSAT54G0135 Cannabis sativa HOM05D007267 ORTHO05D009053 4.0e-28 128.3 74 77.0
Migut.N02428 Erythranthe guttata HOM05D007267 ORTHO05D009053 4.0e-28 128.3 104 60.6
Nn2g14465 Nelumbo nucifera HOM05D007267 ORTHO05D009053 4.0e-28 128.3 94 66.0
Potri.009G155300 Populus trichocarpa HOM05D007267 ORTHO05D009053 4.0e-28 128.3 130 53.1
Eucgr.J00600 Eucalyptus grandis HOM05D007267 ORTHO05D009053 5.2e-28 127.9 117 58.1
Lsat_1_v5_gn_4_124761 Lactuca sativa HOM05D007267 ORTHO05D009053 5.2e-28 127.9 126 54.8
PGSC0003DMG400013132 Solanum tuberosum HOM05D007267 ORTHO05D009053 8.9e-28 127.1 74 79.7
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 1.5e-27 126.3 74 77.0
unitig_8.g2981 Utricularia gibba HOM05D007267 ORTHO05D009053 1.5e-27 126.3 92 68.5
Nitab4.5_0001504g0080 Nicotiana tabacum HOM05D007267 ORTHO05D009053 2.0e-27 125.9 128 58.6
Sopen01g004730 Solanum pennellii HOM05D007267 ORTHO05D009053 2.0e-27 125.9 74 78.4
PGR119G2323 Punica granatum HOM05D007267 ORTHO05D009053 2.6e-27 125.6 72 77.8
VMungo0540G2312 Vigna mungo HOM05D007267 ORTHO05D009053 2.6e-27 125.6 89 66.3
Cpa.g.sc103.55 Carica papaya HOM05D007267 ORTHO05D009053 5.8e-27 124.4 98 63.3
Manes.11G104200 Manihot esculenta HOM05D007267 ORTHO05D009053 5.8e-27 124.4 74 77.0
TWI31G1096 Tripterygium wilfordii HOM05D007267 ORTHO05D009053 5.8e-27 124.4 70 78.6
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 7.6e-27 124.0 90 70.0
TAR623G0997 Trochodendron aralioides HOM05D007267 ORTHO05D009053 7.6e-27 124.0 93 63.4
CAN.G226.32 Capsicum annuum HOM05D007267 ORTHO05D009053 9.9e-27 123.6 118 58.5
FAN11G1992 Fragaria x ananassa HOM05D007267 ORTHO05D009053 9.9e-27 123.6 91 69.2
Solyc01g009245.1 Solanum lycopersicum HOM05D007267 ORTHO05D009053 9.9e-27 123.6 112 58.9
Ah.15g099120 Amaranthus hybridus HOM05D007267 ORTHO05D009053 1.7e-26 122.9 74 77.0
Gohir.A11G015400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 3.8e-26 121.7 74 77.0
Sed0001981 Sechium edule HOM05D007267 ORTHO05D009053 4.9e-26 121.3 109 57.8
PSO339G2642 Papaver somniferum HOM05D007267 ORTHO05D009053 6.4e-26 120.9 86 66.3
PSO384G0574 Papaver somniferum HOM05D007267 ORTHO05D009053 6.4e-26 120.9 86 66.3
SalBow3G2700 Salvia bowleyana HOM05D007267 ORTHO05D009053 6.4e-26 120.9 122 56.6
Duzib168G1484 Durio zibethinus HOM05D007267 ORTHO05D009053 8.4e-26 120.6 90 67.8
Aqoxy2G00618 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 9.3e-25 117.1 72 75.0
Zm00001eb015220 Zea mays HOM05D007267 ORTHO05D009053 4.6e-24 114.8 90 63.3
ATR0697G260 Amborella trichopoda HOM05D007267 ORTHO05D009053 1.3e-23 113.2 74 68.9
Rhsim01G0198000 Rhododendron simsii HOM05D007267 ORTHO05D009053 1.3e-23 113.2 159 44.0
arahy.Tifrunner.gnm1.ann1.SB69IV Arachis hypogaea HOM05D007267 ORTHO05D009053 1.1e-22 110.2 112 53.6
SEGI_22571 Sequoiadendron giganteum HOM05D007267 ORTHO05D009053 1.3e-21 106.7 72 65.3
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 2.1e-21 105.9 62 75.8
Sed0001742 Sechium edule HOM05D007267 ORTHO05D009053 4.8e-21 104.8 81 61.7
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 2.4e-20 102.4 101 56.4
AagrBONN_evm.TU.Sc2ySwM_117.833 Anthoceros agrestis HOM05D007267 ORTHO05D009053 3.1e-20 102.1 137 42.3
Mapoly0146s0012 Marchantia polymorpha HOM05D007267 ORTHO05D009053 9.0e-20 100.5 71 62.0
Aqoxy51s004 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 9.9e-19 97.1 56 76.8
SMO367G0148 Selaginella moellendorffii HOM05D007267 ORTHO05D009053 3.8e-18 95.1 64 57.8
Medtr3g079783 Medicago truncatula HOM05D000005 ORTHO05D000294 4.9e-18 94.7 102 54.9
Pp3c3_19300 Physcomitrium patens HOM05D007267 ORTHO05D009053 4.2e-17 91.7 94 42.6
CBR_g51378 Chara braunii HOM05D007267 ORTHO05D009053 1.6e-16 89.7 70 48.6
BNapus_Darmor_BZH_scaffold_38p01260 Brassica napus HOM05D004779 ORTHO05D005737 8.1e-13 77.4 49 81.6
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 3.4e-11 72.0 40 82.5
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 2.4e-09 65.9 39 76.9
MBI11_g25049_MAGBIO Magnolia biondii HOM05D007267 ORTHO05D009053 3.2e-09 65.5 39 71.8
Nitab4.5_0000157g0140 Nicotiana tabacum HOM05D007267 ORTHO05D009053 5.5e-09 64.7 37 81.1
Os07g0164200 Oryza sativa ssp. japonica HOM05D007267 ORTHO05D009053 1.0e-07 60.5 40 72.5
arahy.Tifrunner.gnm1.ann1.RKVJ8T Arachis hypogaea HOM05D007267 ORTHO05D009053 3.0e-07 58.9 35 77.1
Lsat_1_v5_gn_5_53160 Lactuca sativa HOM05D007267 ORTHO05D009053 6.7e-07 57.8 56 53.6
Lsat_1_v5_gn_6_53880 Lactuca sativa HOM05D007267 ORTHO05D009053 1.1e-06 57.0 57 52.6
Gorai.006G118000 Gossypium raimondii HOM05D007267 ORTHO05D009053 7.4e-06 54.3 54 51.9


User provided reference genes

Program Settings