Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 1.9e-151 539.3 296 100.0
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 2.1e-150 535.8 296 99.3
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 1.1e-143 513.5 296 95.3
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 1.1e-143 513.5 296 95.3
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 5.5e-143 511.1 296 94.9
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 4.8e-139 498.0 296 93.6
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 4.8e-139 498.0 296 93.6
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 1.4e-138 496.5 296 93.6
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 4.5e-129 464.9 312 84.9
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 1.7e-128 463.0 307 84.0
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 5.0e-128 461.5 305 85.2
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 9.5e-127 457.2 296 84.8
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 1.0e-125 453.8 307 83.1
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 1.2e-121 440.3 296 87.2
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 1.0e-120 437.2 297 82.8
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 1.7e-107 393.3 355 67.6
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 9.9e-100 367.5 306 68.0
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 1.2e-97 360.5 300 67.0
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 1.3e-96 357.1 309 61.2
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 1.7e-96 356.7 310 61.3
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 1.7e-96 356.7 304 69.1
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 1.7e-96 356.7 303 65.3
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 1.7e-96 356.7 312 66.3
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 6.2e-94 348.2 317 58.4
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 1.8e-93 346.7 303 65.3
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 3.1e-93 345.9 292 67.5
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 5.2e-93 345.1 306 60.5
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 8.9e-93 344.4 318 64.8
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 1.5e-92 343.6 311 63.3
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 2.0e-92 343.2 310 65.5
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 2.0e-92 343.2 310 65.5
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 2.0e-92 343.2 329 58.4
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 2.6e-92 342.8 312 61.2
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 5.8e-92 341.7 317 60.3
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 7.6e-92 341.3 339 59.3
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 9.9e-92 340.9 324 61.4
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 1.3e-91 340.5 326 58.9
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.7e-91 340.1 327 58.7
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 2.2e-91 339.7 313 60.1
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 2.9e-91 339.3 307 64.2
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 3.8e-91 339.0 311 62.4
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 8.4e-91 337.8 320 59.1
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 8.4e-91 337.8 314 57.6
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 7.1e-90 334.7 319 58.0
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 7.1e-90 334.7 318 61.3
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 7.1e-90 334.7 322 58.4
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 2.1e-89 333.2 298 61.7
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 2.7e-89 332.8 292 58.6
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 3.5e-89 332.4 320 60.6
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 4.6e-89 332.0 320 57.2
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 6.0e-89 331.6 319 59.2
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 6.0e-89 331.6 308 58.4
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 7.8e-89 331.3 310 62.6
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 1.3e-88 330.5 322 61.2
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 8.7e-88 327.8 307 62.5
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 4.3e-87 325.5 309 58.6
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 4.3e-87 325.5 323 57.9
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 4.3e-87 325.5 306 61.1
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 7.3e-87 324.7 306 62.4
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 2.1e-86 323.2 323 59.1
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 2.8e-86 322.8 329 60.2
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 8.1e-86 321.2 329 54.1
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 8.1e-86 321.2 339 52.5
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 1.4e-85 320.5 322 56.2
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 1.4e-85 320.5 322 59.9
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 1.8e-85 320.1 310 60.6
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 2.4e-85 319.7 300 62.3
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 3.1e-85 319.3 325 55.1
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 6.9e-85 318.2 302 62.3
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 9.0e-85 317.8 336 58.9
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 1.2e-84 317.4 317 60.3
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 4.5e-84 315.5 309 63.8
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 4.5e-84 315.5 299 55.9
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 4.5e-84 315.5 288 61.8
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 1.7e-83 313.5 321 57.3
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 4.9e-83 312.0 322 58.7
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 5.4e-82 308.5 320 55.3
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 1.6e-81 307.0 331 51.7
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 4.3e-79 298.9 302 55.6
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 2.1e-78 296.6 297 58.9
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 2.1e-78 296.6 297 58.9
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 4.8e-78 295.4 161 93.8
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 6.2e-78 295.0 262 65.3
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 1.1e-77 294.3 324 55.2
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 1.4e-77 293.9 294 56.5
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 3.1e-77 292.7 397 43.3
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 1.6e-73 280.4 188 73.4
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 2.1e-73 280.0 274 57.3
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 5.1e-72 275.4 324 51.2
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 6.7e-72 275.0 317 55.5
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 1.9e-71 273.5 296 51.4
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 6.2e-70 268.5 297 54.5
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 6.2e-70 268.5 140 97.1
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 6.2e-70 268.5 266 60.2
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 8.1e-70 268.1 192 68.8
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 3.1e-69 266.2 313 51.8
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 6.9e-69 265.0 189 68.3
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 1.3e-67 260.8 250 59.2
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 3.8e-67 259.2 259 55.6
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 1.9e-66 256.9 188 67.0
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 2.5e-66 256.5 183 68.3
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 1.3e-62 244.2 334 43.7
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 9.3e-58 228.0 241 61.0
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 1.2e-57 227.6 194 55.7
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 7.4e-55 218.4 325 41.2
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 9.1e-53 211.5 213 58.7
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 4.2e-50 202.6 192 55.7
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 6.7e-48 195.3 305 40.0
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 3.3e-47 193.0 317 40.1
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 2.2e-43 180.3 151 76.8
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 4.7e-41 172.6 411 32.4
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 1.4e-40 171.0 134 61.9
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 2.5e-26 123.6 120 55.0
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 1.5e-23 114.4 345 28.4
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 8.3e-22 108.6 77 68.8
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 7.0e-21 105.5 174 40.2
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 8.6e-19 98.6 86 66.3
Lj8A284T12 Lonicera japonica HOM05D006103 ORTHO05D007468 7.2e-18 95.5 137 43.8
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 9.5e-18 95.1 70 65.7
SHI06574 Sapria himalayana HOM05D006103 ORTHO05D007468 2.3e-16 90.5 135 39.3
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 4.0e-16 89.7 53 81.1
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 4.4e-15 86.3 55 65.5
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 4.9e-14 82.8 45 84.4
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 1.8e-13 80.9 54 74.1
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 3.1e-13 80.1 138 37.0
Lj8A280T20 Lonicera japonica HOM05D006103 ORTHO05D007468 1.8e-08 64.3 44 75.0
Actinidia25920 Actinidia chinensis HOM05D006103 ORTHO05D007468 4.0e-08 63.2 76 44.7
Rhsim04G0176300 Rhododendron simsii HOM05D006103 ORTHO05D007468 5.7e-07 59.3 55 52.7
RcHm_v2.0_Chr6g0308841 Rosa chinensis HOM05D006103 ORTHO05D007468 6.4e-06 55.8 72 43.1


User provided reference genes

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