Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA02t08079Z Brassica rapa HOM05D008727 ORTHO05D023847 3.3e-104 381.7 192 100.0
A02p30610 Brassica napus HOM05D008727 ORTHO05D023847 9.5e-104 380.2 192 99.5
BolC2t10850H Brassica oleracea HOM05D008727 ORTHO05D023847 3.1e-102 375.2 192 98.4
BcaC03g16915 Brassica carinata HOM05D008727 ORTHO05D023847 7.6e-101 370.5 192 97.4
C02p48180 Brassica napus HOM05D008727 ORTHO05D023847 7.6e-101 370.5 192 97.4
BolC9t60173H Brassica oleracea HOM05D008727 ORTHO05D011379 1.9e-35 153.3 179 49.2
C09p74390 Brassica napus HOM05D008727 ORTHO05D011379 3.2e-35 152.5 179 48.6
BcaC06g31427 Brassica carinata HOM05D008727 ORTHO05D011379 1.4e-33 147.1 176 47.7
A06p45420 Brassica napus HOM05D008727 ORTHO05D011379 4.0e-33 145.6 181 47.0
BraA06t27410Z Brassica rapa HOM05D008727 ORTHO05D011379 4.0e-33 145.6 181 47.0
Sp2g11770 Schrenkiella parvula HOM05D008727 ORTHO05D011379 2.6e-32 142.9 176 49.4
A06p45410 Brassica napus HOM05D008727 ORTHO05D011379 3.3e-32 142.5 176 49.4
C07p30610 Brassica napus HOM05D008727 ORTHO05D011379 3.3e-32 142.5 179 48.6
BolC7t43601H Brassica oleracea HOM05D008727 ORTHO05D011379 3.3e-32 142.5 179 48.6
BraA06t27409Z Brassica rapa HOM05D008727 ORTHO05D011379 3.3e-32 142.5 176 49.4
BcaC06g34300 Brassica carinata HOM05D008727 ORTHO05D011379 4.4e-32 142.1 179 48.6
AT1G54620 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 3.7e-31 139.0 175 47.4
C07p30620 Brassica napus HOM05D008727 ORTHO05D011379 4.8e-31 138.7 177 48.0
BraA10t45379Z Brassica rapa HOM05D008727 ORTHO05D011379 4.8e-31 138.7 184 44.6
BcaC06g34299 Brassica carinata HOM05D008727 ORTHO05D011379 8.2e-31 137.9 177 48.0
BcaC06g31426 Brassica carinata HOM05D008727 ORTHO05D011379 1.8e-30 136.7 177 48.0
AL1G65050 Arabidopsis lyrata HOM05D008727 ORTHO05D011379 3.1e-30 136.0 175 47.4
BolC7t43602H Brassica oleracea HOM05D008727 ORTHO05D011379 3.1e-30 136.0 177 47.5
A10p33490 Brassica napus HOM05D008727 ORTHO05D011379 5.3e-30 135.2 184 44.6
Carub.0002s0896 Capsella rubella HOM05D008727 ORTHO05D011379 5.3e-30 135.2 175 44.6
Thhalv10001116m.g Eutrema salsugineum HOM05D008727 ORTHO05D011379 7.0e-30 134.8 183 45.4
BcaB07g30480 Brassica carinata HOM05D008727 ORTHO05D011379 1.6e-29 133.7 165 50.3
BcaC06g31428 Brassica carinata HOM05D008727 ORTHO05D011379 7.7e-29 131.3 161 49.1
A06p45400 Brassica napus HOM05D008727 ORTHO05D011379 7.7e-29 131.3 177 46.9
BraA06t27408Z Brassica rapa HOM05D008727 ORTHO05D011379 7.7e-29 131.3 177 46.9
AT5G46980 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 4.2e-27 125.6 175 44.6
AT5G46990 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 1.8e-25 120.2 166 42.8
Carub.0008s0088 Capsella rubella HOM05D008727 ORTHO05D011379 2.6e-24 116.3 163 42.3
Thhalv10001202m.g Eutrema salsugineum HOM05D008727 ORTHO05D001261 4.4e-24 115.5 174 40.2
Sp2g11780 Schrenkiella parvula HOM05D008727 ORTHO05D001261 2.2e-23 113.2 187 40.1
Carub.0008s0084 Capsella rubella HOM05D008727 ORTHO05D011379 2.8e-23 112.8 171 40.9
Carub.0008s0086 Capsella rubella HOM05D008727 ORTHO05D011379 1.8e-22 110.2 170 40.0
BcaNung04448 Brassica carinata HOM05D008727 ORTHO05D011379 4.1e-22 109.0 123 49.6
CARHR055710 Cardamine hirsuta HOM05D008727 ORTHO05D011379 4.1e-22 109.0 175 41.1
Sp2g11790 Schrenkiella parvula HOM05D008727 ORTHO05D001261 6.6e-20 101.7 175 39.4
AL8G11310 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 1.8e-17 93.6 182 35.7
Carub.0008s0092 Capsella rubella HOM05D001445 ORTHO05D001261 1.2e-16 90.9 184 33.2
AT5G46930 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 1.7e-15 87.0 182 33.0
AL8G11340 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 6.3e-15 85.1 184 32.6
CARHR174480 Cardamine hirsuta HOM05D001445 ORTHO05D001261 8.3e-15 84.7 157 35.7
Aa31LG9G5990 Aethionema arabicum HOM05D001445 ORTHO05D001261 5.4e-14 82.0 176 32.4
AT5G46970 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 5.4e-14 82.0 166 34.3
Sp2g11760 Schrenkiella parvula HOM05D001445 ORTHO05D001261 2.0e-13 80.1 182 32.4
Aa31sc241G60 Aethionema arabicum HOM05D001445 ORTHO05D001261 4.5e-13 79.0 182 34.1
Thhalv10001100m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 1.0e-12 77.8 182 32.4
AL8G11320 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 1.7e-12 77.0 181 32.0
Aa31sc241G40 Aethionema arabicum HOM05D001445 ORTHO05D001261 2.9e-12 76.3 182 32.4
BcaB07g30808 Brassica carinata HOM05D001445 ORTHO05D001261 6.6e-12 75.1 177 32.2
BcaC03g16912 Brassica carinata HOM05D001445 ORTHO05D001261 1.1e-11 74.3 177 33.3
C02p48140 Brassica napus HOM05D001445 ORTHO05D001261 1.1e-11 74.3 177 33.3
Carub.0008s0090 Capsella rubella HOM05D001445 ORTHO05D001261 1.9e-11 73.6 181 33.1
BolC2t10846H Brassica oleracea HOM05D001445 ORTHO05D001261 2.5e-11 73.2 177 32.8
Carub.0008s0091 Capsella rubella HOM05D001445 ORTHO05D001261 4.3e-11 72.4 180 31.7
Sp2g11720 Schrenkiella parvula HOM05D001445 ORTHO05D001261 4.3e-11 72.4 182 30.8
BraA02t08034Z Brassica rapa HOM05D001445 ORTHO05D001261 2.1e-10 70.1 177 31.6
AT5G46950 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 3.6e-10 69.3 180 31.7
BcaC03g16868 Brassica carinata HOM05D001445 ORTHO05D001261 3.6e-10 69.3 177 30.5
C02p47650 Brassica napus HOM05D001445 ORTHO05D001261 3.6e-10 69.3 177 29.9
BolC2t10801H Brassica oleracea HOM05D001445 ORTHO05D001261 3.6e-10 69.3 177 29.9
A02p30180 Brassica napus HOM05D001445 ORTHO05D001261 6.1e-10 68.6 177 31.1
Sp2g11740 Schrenkiella parvula HOM05D001445 ORTHO05D001261 8.0e-10 68.2 183 29.0
A02p30590 Brassica napus HOM05D001445 ORTHO05D001261 1.0e-09 67.8 177 31.1
AT5G46940 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 1.4e-09 67.4 181 30.9
BraA02t08076Z Brassica rapa HOM05D001445 ORTHO05D001261 2.3e-09 66.6 178 31.5
BcaC06g34301 Brassica carinata HOM05D008727 ORTHO05D011379 5.2e-09 65.5 118 39.8
A02p30580 Brassica napus HOM05D001445 ORTHO05D001261 5.2e-09 65.5 178 31.5
C02p48090 Brassica napus HOM05D001445 ORTHO05D001261 5.2e-09 65.5 167 28.7
BolC2t10840H Brassica oleracea HOM05D001445 ORTHO05D001261 5.2e-09 65.5 167 28.7
AL8G11300 Arabidopsis lyrata HOM05D008727 ORTHO05D011379 6.8e-09 65.1 54 59.3
BcaC03g16913 Brassica carinata HOM05D001445 ORTHO05D001261 1.5e-08 63.9 180 30.0
C02p48150 Brassica napus HOM05D001445 ORTHO05D001261 1.5e-08 63.9 180 30.0
BolC2t10847H Brassica oleracea HOM05D001445 ORTHO05D001261 1.5e-08 63.9 180 30.0
Sp2g11750 Schrenkiella parvula HOM05D001445 ORTHO05D001261 2.0e-08 63.5 180 29.4
C03p62420 Brassica napus HOM05D001445 ORTHO05D001261 2.6e-08 63.2 180 28.3
BolC3t18500H Brassica oleracea HOM05D001445 ORTHO05D001261 2.6e-08 63.2 180 29.4
A02p30500 Brassica napus HOM05D001445 ORTHO05D001261 3.4e-08 62.8 167 27.5
BraA02t08068Z Brassica rapa HOM05D001445 ORTHO05D001261 3.4e-08 62.8 167 27.5
BraA02t08073Z Brassica rapa HOM05D001445 ORTHO05D001261 4.4e-08 62.4 181 30.4
A02p30560 Brassica napus HOM05D001445 ORTHO05D001261 5.8e-08 62.0 180 28.9
A06p45680 Brassica napus HOM05D001445 ORTHO05D001261 5.8e-08 62.0 171 26.3
BraA06t27437Z Brassica rapa HOM05D001445 ORTHO05D001261 5.8e-08 62.0 171 26.3
CARHR174500 Cardamine hirsuta HOM05D001445 ORTHO05D001261 7.5e-08 61.6 176 27.3
TWI15G1112 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 1.3e-07 60.8 193 29.5
MD06G1042400 Malus domestica HOM05D001445 ORTHO05D001261 2.9e-07 59.7 170 27.6
AT5G46960 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 6.4e-07 58.5 180 28.3
Thhalv10001199m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 6.4e-07 58.5 180 27.2
BcaC03g16906 Brassica carinata HOM05D001445 ORTHO05D001261 1.4e-06 57.4 161 29.2
Thecc.03G235500 Theobroma cacao HOM05D001445 ORTHO05D001261 2.4e-06 56.6 174 27.6
BolC7t43597H Brassica oleracea HOM05D008727 ORTHO05D040202 4.1e-06 55.8 57 47.4
Duzib084G0977 Durio zibethinus HOM05D001445 ORTHO05D001261 4.1e-06 55.8 142 29.6
Glyma.17G151200 Glycine max HOM05D001445 ORTHO05D001261 9.2e-06 54.7 168 30.4


User provided reference genes

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