Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 6.6e-136 487.3 228 100.0
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 9.8e-132 473.4 228 97.8
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 4.0e-101 371.7 266 69.5
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 4.5e-100 368.2 273 68.1
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 2.9e-99 365.5 273 67.8
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 2.9e-99 365.5 273 67.8
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 2.7e-97 359.0 235 73.2
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 1.7e-91 339.7 276 61.6
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 6.4e-91 337.8 267 62.5
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 1.9e-90 336.3 276 60.5
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 3.2e-90 335.5 267 62.2
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 7.1e-90 334.3 274 61.7
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 9.3e-90 334.0 201 78.6
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 1.3e-88 330.1 279 59.1
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 8.7e-88 327.4 268 60.8
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 3.3e-87 325.5 276 59.1
BcaC03g16910 Brassica carinata HOM05D008086 ORTHO05D004972 7.4e-87 324.3 196 80.1
BraA02t08035Z Brassica rapa HOM05D008086 ORTHO05D004972 4.8e-86 321.6 274 62.4
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 6.2e-86 321.2 233 68.7
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 2.4e-85 319.3 271 59.4
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 5.3e-85 318.2 261 60.5
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 2.1e-81 306.2 238 67.2
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 4.2e-74 282.0 231 61.5
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 2.5e-71 272.7 240 59.2
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 2.0e-68 263.1 218 63.8
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 1.3e-67 260.4 257 53.7
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 1.3e-67 260.4 257 53.7
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 5.5e-66 255.0 254 52.0
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 3.0e-64 249.2 238 52.9
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 3.9e-64 248.8 216 59.7
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 3.9e-64 248.8 244 52.9
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 2.0e-63 246.5 233 55.4
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 3.3e-63 245.7 274 50.0
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 1.3e-62 243.8 261 51.7
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 2.8e-62 242.7 211 62.6
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 4.8e-62 241.9 259 50.2
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 8.2e-62 241.1 251 50.6
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 1.4e-61 240.4 225 59.1
AL8G10380 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 1.2e-60 237.3 257 52.1
A02p30190 Brassica napus HOM05D008086 ORTHO05D004972 1.5e-60 236.9 223 59.2
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 1.0e-59 234.2 263 49.8
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 6.5e-59 231.5 258 49.2
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 2.5e-58 229.6 254 50.0
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 4.7e-57 225.3 244 50.8
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 2.3e-56 223.0 245 50.2
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 2.3e-56 223.0 245 50.2
C03p62430 Brassica napus HOM05D008086 ORTHO05D004972 3.0e-56 222.6 119 87.4
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 8.8e-56 221.1 240 51.2
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 8.8e-56 221.1 260 45.8
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 1.5e-55 220.3 245 50.2
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 5.7e-55 218.4 239 50.6
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 7.4e-55 218.0 269 46.1
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 8.2e-54 214.5 201 54.2
BolC2t10844H Brassica oleracea HOM05D008086 ORTHO05D041227 1.8e-53 213.4 123 83.7
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.4e-53 213.0 242 47.5
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 8.5e-51 204.5 194 59.3
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 1.9e-50 203.4 232 47.0
BolC3t18501H Brassica oleracea HOM05D008086 ORTHO05D004972 1.2e-49 200.7 108 86.1
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 2.7e-49 199.5 231 45.0
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 1.0e-48 197.6 278 41.7
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.8e-45 186.8 216 46.8
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 5.9e-44 181.8 152 59.2
C02p48120 Brassica napus HOM05D008086 ORTHO05D041227 9.4e-42 174.5 104 80.8
A02p30540 Brassica napus HOM05D008086 ORTHO05D004972 1.9e-34 150.2 149 56.4
BraA02t08072Z Brassica rapa HOM05D008086 ORTHO05D004972 7.2e-34 148.3 144 56.2
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 4.7e-25 119.0 116 52.6
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.1e-21 107.8 119 42.9
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 1.9e-21 107.1 196 33.7
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 1.9e-21 107.1 196 33.7
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 1.9e-21 107.1 145 40.0
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 3.2e-21 106.3 119 42.9
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 4.1e-21 105.9 119 42.0
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 2.0e-20 103.6 108 45.4
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 2.0e-20 103.6 108 45.4
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.7e-19 100.5 122 41.0
C07p32950 Brassica napus HOM05D008086 ORTHO05D004972 1.7e-19 100.5 115 49.6
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 1.7e-19 100.5 129 38.0
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 3.0e-19 99.8 153 39.9
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 6.6e-19 98.6 119 39.5
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 8.6e-19 98.2 119 39.5
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 1.5e-18 97.4 127 37.0
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 1.9e-18 97.1 133 36.8
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 4.3e-18 95.9 119 38.7
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 4.3e-18 95.9 153 37.9
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.6e-17 94.0 129 37.2
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 4.7e-17 92.4 117 36.8
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 8.1e-17 91.7 172 35.5
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 8.1e-17 91.7 228 29.8
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 1.1e-16 91.3 122 41.0
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 1.8e-16 90.5 156 37.8
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.8e-16 90.5 123 39.0
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 2.3e-16 90.1 133 36.8
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 3.1e-16 89.7 141 39.0
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 4.0e-16 89.4 119 38.7
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 4.0e-16 89.4 120 40.8
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 4.0e-16 89.4 120 40.8
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 5.2e-16 89.0 138 39.1
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 6.8e-16 88.6 110 42.7
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 6.8e-16 88.6 110 42.7
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 8.9e-16 88.2 113 40.7
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 8.9e-16 88.2 108 39.8
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 1.2e-15 87.8 126 38.1
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 2.0e-15 87.0 219 28.8
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 3.4e-15 86.3 106 44.3
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 5.8e-15 85.5 242 26.9
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 5.8e-15 85.5 107 41.1
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.7e-14 84.0 100 41.0
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 2.2e-14 83.6 233 25.3
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 2.2e-14 83.6 233 25.3
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 3.7e-14 82.8 115 37.4
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 3.7e-14 82.8 108 35.2
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 8.3e-14 81.6 123 37.4
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 8.3e-14 81.6 123 37.4
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 1.1e-13 81.3 109 38.5
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 2.4e-13 80.1 132 34.1
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 7.1e-13 78.6 131 40.5
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 9.2e-13 78.2 215 28.8
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 9.2e-13 78.2 215 28.8
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 9.2e-13 78.2 112 34.8
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 9.2e-13 78.2 112 34.8
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.2e-12 77.8 129 36.4
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.6e-12 77.4 109 37.6
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 2.1e-12 77.0 154 36.4
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 3.5e-12 76.3 188 26.1
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 4.6e-12 75.9 216 29.6
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 6.0e-12 75.5 214 29.4
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 6.0e-12 75.5 123 35.0
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.0e-11 74.7 206 29.1
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 1.3e-11 74.3 237 28.7
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 1.7e-11 73.9 132 29.5
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 1.7e-11 73.9 132 29.5
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 1.7e-11 73.9 125 32.8
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 2.3e-11 73.6 115 41.7
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 3.0e-11 73.2 124 31.5
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 3.9e-11 72.8 216 28.7
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 5.1e-11 72.4 145 29.7
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 5.1e-11 72.4 123 32.5
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 6.6e-11 72.0 117 32.5
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 1.1e-10 71.2 115 29.6
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.5e-10 70.9 112 33.0
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.9e-10 70.5 129 34.1
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.9e-10 70.5 88 38.6
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 2.5e-10 70.1 115 29.6
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 2.5e-10 70.1 129 31.8
CAN.G1218.23 Capsicum annuum HOM05D008086 ORTHO05D010560 3.3e-10 69.7 99 39.4
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 4.3e-10 69.3 135 32.6
Peaxi162Scf00002g01721 Petunia axillaris HOM05D008086 ORTHO05D010560 7.3e-10 68.6 99 39.4
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 9.5e-10 68.2 105 35.2
PGSC0003DMG400004806 Solanum tuberosum HOM05D008086 ORTHO05D010560 9.5e-10 68.2 99 38.4
Sopen08g027190 Solanum pennellii HOM05D001099 ORTHO05D010560 1.2e-09 67.8 99 38.4
AL7G38340 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 2.1e-09 67.0 210 27.1
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 6.2e-09 65.5 83 37.3
Solyc08g078720.3 Solanum lycopersicum HOM05D008086 ORTHO05D010560 6.2e-09 65.5 99 37.4
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 8.1e-09 65.1 116 31.9
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 8.1e-09 65.1 116 31.9
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 8.1e-09 65.1 116 31.9
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 1.1e-08 64.7 115 33.0
Nitab4.5_0008481g0040 Nicotiana tabacum HOM05D008086 ORTHO05D010560 1.1e-08 64.7 99 38.4
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 1.4e-08 64.3 99 37.4
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 5.2e-08 62.4 115 30.4
Rhsim09G0039000 Rhododendron simsii HOM05D007337 ORTHO05D000958 5.8e-07 58.9 103 35.9
Dinv39135 Davidia involucrata HOM05D009070 ORTHO05D010560 1.7e-06 57.4 115 29.6
A06p44940 Brassica napus HOM05D009070 ORTHO05D010560 3.7e-06 56.2 102 33.3
BraA06t27365Z Brassica rapa HOM05D009070 ORTHO05D010560 3.7e-06 56.2 102 33.3
Solyc08g078710.3 Solanum lycopersicum HOM05D001099 ORTHO05D010560 3.7e-06 56.2 106 34.9
C07p31240 Brassica napus HOM05D009070 ORTHO05D010560 4.9e-06 55.8 102 33.3
BolC7t43665H Brassica oleracea HOM05D009070 ORTHO05D010560 4.9e-06 55.8 102 33.3
CAN.G1218.24 Capsicum annuum HOM05D001099 ORTHO05D000958 8.4e-06 55.1 106 34.0


User provided reference genes

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