Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 5.8e-71 270.8 136 100.0
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 5.8e-71 270.8 136 100.0
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 3.5e-68 261.5 136 97.1
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 3.5e-68 261.5 136 97.1
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 3.5e-68 261.5 136 97.1
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 2.1e-52 209.1 136 77.9
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 1.4e-48 196.4 136 75.0
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 3.1e-48 195.3 135 76.3
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 3.4e-47 191.8 136 73.5
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 4.5e-47 191.4 138 73.9
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 2.6e-39 165.6 136 66.9
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 2.6e-39 165.6 136 66.9
BcaC06g31447 Brassica carinata HOM05D011808 ORTHO05D006110 2.8e-33 145.6 132 61.4
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 1.0e-11 73.9 124 40.3
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 6.7e-11 71.2 126 42.1
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.1e-10 70.5 135 42.2
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.1e-10 70.5 122 40.2
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 1.5e-10 70.1 122 41.0
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.0e-10 69.7 127 43.3
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.0e-10 69.7 127 43.3
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 2.6e-10 69.3 140 40.7
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 9.7e-10 67.4 135 41.5
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 1.3e-09 67.0 121 39.7
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.3e-09 67.0 123 39.0
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 1.7e-09 66.6 126 41.3
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 2.2e-09 66.2 135 40.7
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 2.2e-09 66.2 125 34.4
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 2.2e-09 66.2 122 38.5
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 3.7e-09 65.5 132 37.1
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 4.8e-09 65.1 121 38.8
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 6.3e-09 64.7 122 36.9
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 8.2e-09 64.3 122 36.1
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 1.1e-08 63.9 131 42.0
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 1.4e-08 63.5 123 38.2
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 1.4e-08 63.5 125 40.0
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.8e-08 63.2 124 38.7
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.8e-08 63.2 124 39.5
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 3.1e-08 62.4 135 37.8
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 4.1e-08 62.0 124 37.1
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 4.1e-08 62.0 124 37.1
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 4.1e-08 62.0 131 41.2
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 5.3e-08 61.6 126 38.1
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 7.0e-08 61.2 125 39.2
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 1.2e-07 60.5 122 39.3
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 1.5e-07 60.1 127 38.6
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 2.0e-07 59.7 126 38.1
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 2.6e-07 59.3 125 36.0
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 3.4e-07 58.9 131 39.7
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 3.4e-07 58.9 114 37.7
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 3.4e-07 58.9 130 39.2
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 7.7e-07 57.8 131 35.9
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 7.7e-07 57.8 131 35.9
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 1.0e-06 57.4 124 35.5
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 1.3e-06 57.0 137 34.3
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 1.3e-06 57.0 121 35.5
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 1.7e-06 56.6 136 33.1
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.7e-06 56.6 133 35.3
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 2.9e-06 55.8 134 35.8
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 5.0e-06 55.1 131 36.6
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 5.0e-06 55.1 128 39.8
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 6.5e-06 54.7 123 36.6


User provided reference genes

Program Settings