Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA02t07074Z Brassica rapa HOM05D005628 ORTHO05D007348 1.9e-43 178.7 85 100.0
A02p20420 Brassica napus HOM05D005628 ORTHO05D007348 1.1e-24 116.3 60 93.3
Sp5g31200 Schrenkiella parvula HOM05D005628 ORTHO05D007348 4.3e-24 114.4 57 94.7
BcaC08g47294 Brassica carinata HOM05D005628 ORTHO05D007348 7.4e-24 113.6 57 94.7
C06p50020 Brassica napus HOM05D005628 ORTHO05D007348 7.4e-24 113.6 57 94.7
AL2G36120 Arabidopsis lyrata HOM05D005628 ORTHO05D007348 9.6e-24 113.2 57 93.0
AT1G76080 Arabidopsis thaliana HOM05D005628 ORTHO05D007348 9.6e-24 113.2 57 93.0
BcaC08g47300 Brassica carinata HOM05D005628 ORTHO05D007348 9.6e-24 113.2 57 93.0
BcaC08g47301 Brassica carinata HOM05D005628 ORTHO05D007348 9.6e-24 113.2 57 93.0
A07p41640 Brassica napus HOM05D005628 ORTHO05D007348 9.6e-24 113.2 57 93.0
BolC6t40041H Brassica oleracea HOM05D005628 ORTHO05D007348 9.6e-24 113.2 57 93.0
BraA07t31693Z Brassica rapa HOM05D005628 ORTHO05D007348 9.6e-24 113.2 57 93.0
Thhalv10018920m.g Eutrema salsugineum HOM05D005628 ORTHO05D007348 9.6e-24 113.2 57 93.0
BcaC03g15644 Brassica carinata HOM05D005628 ORTHO05D007348 2.8e-23 111.7 57 93.0
C02p33470 Brassica napus HOM05D005628 ORTHO05D007348 2.8e-23 111.7 57 93.0
CARHR069620 Cardamine hirsuta HOM05D005628 ORTHO05D007348 8.2e-23 110.2 57 87.7
Carub.0002s2297 Capsella rubella HOM05D005628 ORTHO05D007348 1.1e-22 109.8 57 87.7
BolC2t09357H Brassica oleracea HOM05D005628 ORTHO05D007348 1.4e-22 109.4 57 91.2
Aa31LG4G6200 Aethionema arabicum HOM05D005628 ORTHO05D007348 3.4e-21 104.8 57 84.2
Aqoxy5G01095 Aquilegia oxysepala HOM05D005628 ORTHO05D007348 2.2e-20 102.1 57 82.5
arahy.Tifrunner.gnm1.ann1.W1N14J Arachis hypogaea HOM05D005628 ORTHO05D007348 3.8e-20 101.3 57 78.9
unitig_749.g13905 Utricularia gibba HOM05D005628 ORTHO05D007348 6.5e-20 100.5 62 75.8
Potri.005G245700 Populus trichocarpa HOM05D005628 ORTHO05D007348 1.1e-19 99.8 57 78.9
THA.LOC104811445 Tarenaya hassleriana HOM05D005628 ORTHO05D007348 1.1e-19 99.8 57 80.7
SGA_v2.0_scaffold145G36102 Striga asiatica HOM05D005628 ORTHO05D007348 1.4e-19 99.4 57 80.7
Migut.C00901 Erythranthe guttata HOM05D005628 ORTHO05D007348 1.9e-19 99.0 57 78.9
PGR031G3420 Punica granatum HOM05D005628 ORTHO05D007348 1.9e-19 99.0 57 78.9
MSTRG.25277 Avicennia marina HOM05D005628 ORTHO05D007348 2.5e-19 98.6 57 78.9
PSO170G4881 Papaver somniferum HOM05D005628 ORTHO05D007348 3.2e-19 98.2 57 77.2
Sabra05G0189800 Salix brachista HOM05D005628 ORTHO05D007348 3.2e-19 98.2 57 77.2
arahy.Tifrunner.gnm1.ann1.KUZ5B2 Arachis hypogaea HOM05D005628 ORTHO05D007348 4.2e-19 97.8 57 75.4
Haze_22711 Corylus avellana HOM05D005628 ORTHO05D007348 4.2e-19 97.8 57 77.2
Lj5g0010043 Lotus japonicus HOM05D005628 ORTHO05D007348 4.2e-19 97.8 57 75.4
Manes.05G142400 Manihot esculenta HOM05D005628 ORTHO05D007348 4.2e-19 97.8 57 77.2
Nn5g30848 Nelumbo nucifera HOM05D005628 ORTHO05D007348 4.2e-19 97.8 57 78.9
MD15G1006700 Malus domestica HOM05D005628 ORTHO05D007348 5.5e-19 97.4 57 77.2
Ah.00g000640 Amaranthus hybridus HOM05D005628 ORTHO05D007348 7.1e-19 97.1 62 74.2
TPR.G26414 Trifolium pratense HOM05D005628 ORTHO05D007348 7.1e-19 97.1 57 77.2
CiPaw.07G143500 Carya illinoinensis HOM05D005628 ORTHO05D007348 9.3e-19 96.7 57 77.2
Cc10_g01120 Coffea canephora HOM05D005628 ORTHO05D007348 9.3e-19 96.7 57 78.9
CiPaw.08G069300 Carya illinoinensis HOM05D005628 ORTHO05D007348 1.2e-18 96.3 57 77.2
MD08G1007500 Malus domestica HOM05D005628 ORTHO05D007348 1.2e-18 96.3 57 75.4
Prupe.1G359300 Prunus persica HOM05D005628 ORTHO05D007348 1.2e-18 96.3 57 78.9
vmacro04380 Vaccinium macrocarpon HOM05D005628 ORTHO05D007348 1.2e-18 96.3 57 77.2
CAN.G311.75 Capsicum annuum HOM05D005628 ORTHO05D007348 1.6e-18 95.9 57 75.4
Ca_13486_v3 Cicer arietinum L. HOM05D005628 ORTHO05D007348 1.6e-18 95.9 57 75.4
Ciclev10001692m.g Citrus clementina HOM05D005628 ORTHO05D007348 1.6e-18 95.9 57 77.2
Lalb_Chr03g0033571 Lupinus albus HOM05D005628 ORTHO05D007348 1.6e-18 95.9 57 75.4
Dinv31894 Davidia involucrata HOM05D005628 ORTHO05D007348 2.1e-18 95.5 57 75.4
Medtr1g026125 Medicago truncatula HOM05D005628 ORTHO05D007348 2.1e-18 95.5 57 73.7
Oeu007384.1 Olea europaea HOM05D005628 ORTHO05D007348 2.1e-18 95.5 57 73.7
Actinidia29770 Actinidia chinensis HOM05D005628 ORTHO05D007348 2.7e-18 95.1 57 73.7
Nitab4.5_0003030g0070 Nicotiana tabacum HOM05D005628 ORTHO05D007348 2.7e-18 95.1 57 75.4
CSS0034642 Camellia sinensis var. sinensis HOM05D005628 ORTHO05D007348 3.5e-18 94.7 62 67.7
FvH4_2g37930 Fragaria vesca HOM05D005628 ORTHO05D007348 3.5e-18 94.7 57 75.4
FAN20G0939 Fragaria x ananassa HOM05D005628 ORTHO05D007348 3.5e-18 94.7 57 75.4
FAN27G2668 Fragaria x ananassa HOM05D005628 ORTHO05D007348 3.5e-18 94.7 57 75.4
Peaxi162Scf00174g00813 Petunia axillaris HOM05D005628 ORTHO05D007348 3.5e-18 94.7 57 73.7
TAR376G1006 Trochodendron aralioides HOM05D005628 ORTHO05D007348 3.5e-18 94.7 57 73.7
Actinidia37955 Actinidia chinensis HOM05D005628 ORTHO05D007348 4.6e-18 94.4 58 70.7
EL10Ac1g02081 Beta vulgaris HOM05D005628 ORTHO05D007348 4.6e-18 94.4 57 78.9
CDE02G2619 Ceratophyllum demersum HOM05D005628 ORTHO05D007348 4.6e-18 94.4 57 75.4
Sed0003076 Sechium edule HOM05D005628 ORTHO05D007348 4.6e-18 94.4 57 80.7
Solyc04g081970.3 Solanum lycopersicum HOM05D005628 ORTHO05D007348 4.6e-18 94.4 57 73.7
Sopen04g035620 Solanum pennellii HOM05D005628 ORTHO05D007348 4.6e-18 94.4 57 73.7
QL02p012950 Quercus lobata HOM05D005628 ORTHO05D007348 6.0e-18 94.0 62 71.0
Rhsim07G0251100 Rhododendron simsii HOM05D005628 ORTHO05D007348 6.0e-18 94.0 57 75.4
Zm00001eb319950 Zea mays HOM05D005628 ORTHO05D007348 6.0e-18 94.0 58 79.3
FAN15G2092 Fragaria x ananassa HOM05D005628 ORTHO05D007348 7.9e-18 93.6 57 73.7
Cfa014012 Carpinus fangiana HOM05D005628 ORTHO05D007348 1.0e-17 93.2 57 73.7
PSO210G2114 Papaver somniferum HOM05D005628 ORTHO05D007348 1.0e-17 93.2 57 78.9
Psat6g000840 Pisum sativum HOM05D005628 ORTHO05D007348 1.0e-17 93.2 57 73.7
PGSC0003DMG400009956 Solanum tuberosum HOM05D005628 ORTHO05D007348 1.0e-17 93.2 57 71.9
Eucgr.F03707 Eucalyptus grandis HOM05D005628 ORTHO05D007348 1.3e-17 92.8 57 73.7
RcHm_v2.0_Chr6g0303681 Rosa chinensis HOM05D005628 ORTHO05D007348 1.3e-17 92.8 57 73.7
Lj4C17T5 Lonicera japonica HOM05D005628 ORTHO05D007348 1.8e-17 92.4 57 71.9
HanXRQChr05g0146641 Helianthus annuus HOM05D005628 ORTHO05D007348 3.0e-17 91.7 57 77.2
Os07g0476900 Oryza sativa ssp. japonica HOM05D005628 ORTHO05D007348 3.0e-17 91.7 52 78.8
CANSAT64G0481 Cannabis sativa HOM05D005628 ORTHO05D007348 3.9e-17 91.3 57 71.9
MBI05_g13277_MAGBIO Magnolia biondii HOM05D005628 ORTHO05D007348 3.9e-17 91.3 57 71.9
Hund01723 Selenicereus undatus HOM05D005628 ORTHO05D007348 3.9e-17 91.3 57 73.7
DCAR_009514 Daucus carota HOM05D005628 ORTHO05D007348 5.1e-17 90.9 57 73.7
COL.COLO4_26082 Corchorus olitorius HOM05D005628 ORTHO05D007348 6.7e-17 90.5 57 75.4
CsaV3_2G024440 Cucumis sativus L. HOM05D005628 ORTHO05D007348 6.7e-17 90.5 57 77.2
ATR0661G503 Amborella trichopoda HOM05D005628 ORTHO05D007348 1.1e-16 89.7 53 73.6
Gohir.A05G182700 Gossypium hirsutum HOM05D005628 ORTHO05D007348 1.5e-16 89.4 57 73.7
Sc15g0004660 Simmondsia chinensis HOM05D005628 ORTHO05D007348 1.5e-16 89.4 57 70.2
ClCG08G014020 Citrullus lanatus HOM05D005628 ORTHO05D007348 1.9e-16 89.0 57 73.7
Gohir.D05G185700 Gossypium hirsutum HOM05D005628 ORTHO05D007348 1.9e-16 89.0 57 71.9
Gorai.009G191100 Gossypium raimondii HOM05D005628 ORTHO05D007348 1.9e-16 89.0 57 71.9
Phvul.001G002100 Phaseolus vulgaris HOM05D005628 ORTHO05D007348 1.9e-16 89.0 57 73.7
TWI56G0240 Tripterygium wilfordii HOM05D005628 ORTHO05D007348 1.9e-16 89.0 57 71.9
Cpa.g.sc26.263 Carica papaya HOM05D005628 ORTHO05D007348 2.5e-16 88.6 57 73.7
MELO3C011340.2 Cucumis melo HOM05D005628 ORTHO05D007348 2.5e-16 88.6 57 75.4
SMO356G0420 Selaginella moellendorffii HOM05D005628 ORTHO05D007348 2.5e-16 88.6 62 64.5
Thecc.08G051900 Theobroma cacao HOM05D005628 ORTHO05D007348 2.5e-16 88.6 57 71.9
AUR62013879 Chenopodium quinoa HOM05D005628 ORTHO05D007348 3.3e-16 88.2 57 73.7
AUR62036715 Chenopodium quinoa HOM05D005628 ORTHO05D007348 3.3e-16 88.2 57 71.9
Duzib116G0718 Durio zibethinus HOM05D005628 ORTHO05D007348 3.3e-16 88.2 57 71.9
Hma1.2p1_1598F.1_g292970 Hydrangea macrophylla HOM05D005628 ORTHO05D007348 4.3e-16 87.8 57 68.4
PSO648G0024 Papaver somniferum HOM05D005628 ORTHO05D007348 4.3e-16 87.8 57 71.9
PSO648G0070 Papaver somniferum HOM05D005628 ORTHO05D007348 4.3e-16 87.8 57 71.9
PSO648G0080 Papaver somniferum HOM05D005628 ORTHO05D007348 4.3e-16 87.8 57 71.9
PSO795G0001 Papaver somniferum HOM05D005628 ORTHO05D007348 4.3e-16 87.8 57 71.9
Atru.chr13.215 Acer truncatum HOM05D005628 ORTHO05D007348 5.7e-16 87.4 57 73.7
PSO339G4729 Papaver somniferum HOM05D005628 ORTHO05D007348 7.4e-16 87.0 57 68.4
Lsat_1_v5_gn_0_661 Lactuca sativa HOM05D005628 ORTHO05D007348 9.7e-16 86.7 57 73.7
TWI36G0492 Tripterygium wilfordii HOM05D005628 ORTHO05D007348 9.7e-16 86.7 57 70.2
ECA232G2943 Erigeron canadensis HOM05D005628 ORTHO05D007348 1.3e-15 86.3 57 71.9
Glyma.14G222500 Glycine max HOM05D005628 ORTHO05D007348 1.3e-15 86.3 57 70.2
VMungo0647G1170 Vigna mungo HOM05D005628 ORTHO05D007348 1.3e-15 86.3 57 70.2
Lj9P400T45 Lonicera japonica HOM05D005628 ORTHO05D007348 1.4e-14 82.8 57 59.6
HPP92_014531 Vanilla planifolia HOM05D005628 ORTHO05D007348 1.8e-14 82.4 56 67.9
SEGI_09368 Sequoiadendron giganteum HOM05D005628 ORTHO05D007348 4.1e-14 81.3 56 66.1
Mapoly0024s0029 Marchantia polymorpha HOM05D005628 ORTHO05D007348 2.0e-13 79.0 58 56.9
PSO170G2194 Papaver somniferum HOM05D005628 ORTHO05D007348 2.6e-13 78.6 56 60.7
PSO017G6535 Papaver somniferum HOM05D005628 ORTHO05D007348 5.9e-13 77.4 56 60.7
Pp3c13_21520 Physcomitrium patens HOM05D005628 ORTHO05D007348 1.7e-12 75.9 61 52.5
Prupe.6G111600 Prunus persica HOM05D005628 ORTHO05D007348 3.2e-11 71.6 50 66.0
CBR_g26413 Chara braunii HOM05D005628 ORTHO05D007348 4.2e-11 71.2 61 55.7
GSVIVG01023970001 Vitis vinifera HOM05D000151 ORTHO05D000074 3.3e-08 61.6 31 87.1
Migut.B00054 Erythranthe guttata HOM05D005628 ORTHO05D007348 1.3e-07 59.7 55 45.5
SGA_v2.0_scaffold58G20340 Striga asiatica HOM05D005628 ORTHO05D007348 2.4e-06 55.5 50 44.0


User provided reference genes

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