Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 1.0e-61 240.0 124 100.0
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 4.2e-52 208.0 124 90.3
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 3.7e-48 194.9 124 87.9
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 1.4e-42 176.4 109 83.5
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 6.3e-40 167.5 87 95.4
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 5.3e-39 164.5 87 92.0
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 6.9e-39 164.1 87 92.0
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 3.4e-38 161.8 87 92.0
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 1.0e-37 160.2 87 89.7
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 1.3e-37 159.8 87 90.8
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 1.4e-23 113.2 87 69.0
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 2.2e-21 105.9 74 70.3
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 7.2e-20 100.9 74 64.9
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 9.4e-20 100.5 74 67.6
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 2.1e-19 99.4 91 54.9
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 2.7e-19 99.0 73 64.4
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 3.6e-19 98.6 77 61.0
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 4.7e-19 98.2 73 64.4
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 6.1e-19 97.8 80 57.5
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 1.0e-18 97.1 88 54.5
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 1.4e-18 96.7 73 61.6
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 2.3e-18 95.9 80 57.5
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 2.3e-18 95.9 75 62.7
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 2.3e-18 95.9 72 65.3
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 5.2e-18 94.7 76 59.2
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 5.2e-18 94.7 72 65.3
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 5.2e-18 94.7 66 69.7
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 6.8e-18 94.4 75 64.0
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 8.8e-18 94.0 81 64.2
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 8.8e-18 94.0 74 62.2
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 1.2e-17 93.6 75 60.0
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 1.5e-17 93.2 87 50.6
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 2.6e-17 92.4 74 62.2
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 3.4e-17 92.0 87 49.4
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 7.5e-17 90.9 72 61.1
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 7.5e-17 90.9 87 49.4
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 9.8e-17 90.5 74 59.5
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 1.3e-16 90.1 74 62.2
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 3.7e-16 88.6 76 56.6
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 4.8e-16 88.2 75 58.7
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 4.8e-16 88.2 83 57.8
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 6.3e-16 87.8 80 57.5
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 8.3e-16 87.4 65 63.1
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 8.3e-16 87.4 73 60.3
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 1.1e-15 87.0 79 53.2
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.1e-15 87.0 72 59.7
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 1.8e-15 86.3 75 57.3
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 3.1e-15 85.5 72 56.9
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 4.1e-15 85.1 87 50.6
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 4.1e-15 85.1 72 56.9
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 4.1e-15 85.1 72 56.9
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 4.1e-15 85.1 73 56.2
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 5.4e-15 84.7 83 56.6
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 7.0e-15 84.3 74 56.8
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 7.0e-15 84.3 73 58.9
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 7.0e-15 84.3 71 56.3
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 1.2e-14 83.6 96 50.0
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 1.6e-14 83.2 73 58.9
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 2.0e-14 82.8 72 58.3
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 2.7e-14 82.4 72 54.2
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 3.5e-14 82.0 85 49.4
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 3.5e-14 82.0 74 56.8
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 3.5e-14 82.0 88 51.1
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 4.5e-14 81.6 73 57.5
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 2.9e-13 79.0 83 54.2
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 6.5e-13 77.8 72 54.2
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 8.5e-13 77.4 73 54.8
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 8.5e-13 77.4 73 54.8
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 1.9e-12 76.3 53 67.9
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 1.9e-12 76.3 53 67.9
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 1.9e-12 76.3 72 52.8
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 5.5e-12 74.7 72 51.4
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.4e-10 70.1 67 50.7
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 2.6e-09 65.9 72 48.6
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 3.4e-09 65.5 60 50.0
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 3.4e-09 65.5 59 54.2
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 7.5e-09 64.3 75 45.3
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 3.7e-08 62.0 72 44.4
Aa31LG3G11430 Aethionema arabicum HOM05D007721 ORTHO05D009811 8.3e-08 60.8 57 56.1


User provided reference genes

Program Settings