Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 1.1e-141 506.5 244 100.0
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 1.5e-141 506.1 243 100.0
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 2.6e-138 495.4 244 97.5
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 3.4e-138 495.0 243 97.5
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 3.4e-138 495.0 243 97.5
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 3.6e-132 474.9 243 92.6
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 1.2e-127 459.9 243 88.9
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.6e-127 459.5 243 88.9
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 4.6e-127 458.0 243 88.9
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 7.3e-125 450.7 243 86.8
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 2.4e-120 435.6 243 83.1
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 7.1e-96 354.4 178 92.7
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 1.8e-94 349.7 240 70.4
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 8.7e-94 347.4 235 71.1
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 8.7e-94 347.4 240 70.0
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 8.7e-94 347.4 236 68.6
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 2.5e-93 345.9 246 69.9
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 4.3e-93 345.1 236 67.8
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 2.8e-92 342.4 242 69.0
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 4.8e-92 341.7 204 78.9
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 1.4e-91 340.1 207 76.3
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 3.1e-91 339.0 243 67.1
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 4.0e-91 338.6 236 68.2
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 9.0e-91 337.4 240 67.9
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 9.0e-91 337.4 240 67.9
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 1.2e-90 337.0 236 67.8
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 1.5e-90 336.7 241 66.8
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 2.0e-90 336.3 207 76.3
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 2.0e-90 336.3 242 67.8
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 1.0e-89 334.0 237 65.8
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 6.5e-89 331.3 224 69.2
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 1.9e-88 329.7 245 65.7
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 4.2e-88 328.6 226 68.6
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 7.1e-88 327.8 244 65.6
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 7.1e-88 327.8 220 70.5
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 9.3e-88 327.4 237 64.6
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 9.3e-88 327.4 241 65.1
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 1.2e-87 327.0 243 64.6
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 1.2e-87 327.0 257 63.4
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 1.2e-87 327.0 236 65.7
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 1.6e-87 326.6 249 65.1
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 2.1e-87 326.2 198 76.8
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 2.7e-87 325.9 219 69.4
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 2.7e-87 325.9 238 67.2
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 4.6e-87 325.1 199 75.4
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 4.6e-87 325.1 245 63.7
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 6.0e-87 324.7 250 64.8
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 7.9e-87 324.3 228 67.5
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 1.0e-86 323.9 222 68.9
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 1.3e-86 323.6 197 75.6
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 1.8e-86 323.2 250 64.4
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 3.0e-86 322.4 237 65.4
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 3.0e-86 322.4 232 66.4
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 3.9e-86 322.0 237 66.2
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 8.7e-86 320.9 206 71.4
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 1.1e-85 320.5 239 65.3
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 1.1e-85 320.5 233 66.1
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 2.5e-85 319.3 227 68.7
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.3e-85 318.9 257 61.5
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 5.7e-85 318.2 235 63.8
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 9.7e-85 317.4 236 64.0
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 1.6e-84 316.6 248 63.3
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 2.8e-84 315.8 226 66.8
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 2.8e-84 315.8 245 64.5
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 1.1e-83 313.9 157 91.7
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 1.1e-83 313.9 236 61.9
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 1.1e-83 313.9 206 70.4
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.8e-83 313.2 296 57.4
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 5.3e-83 311.6 178 79.8
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 5.3e-83 311.6 241 63.1
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 9.0e-83 310.8 250 60.0
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.5e-82 310.1 181 76.8
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 5.9e-82 308.1 186 74.7
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 1.3e-81 307.0 241 62.2
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 2.2e-81 306.2 199 69.8
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 5.0e-81 305.1 216 65.7
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 6.5e-81 304.7 226 65.9
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 1.4e-80 303.5 199 70.4
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 3.2e-80 302.4 241 60.6
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 1.8e-78 296.6 245 59.2
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.0e-74 283.1 260 56.5
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 2.2e-73 279.6 229 58.1
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 3.8e-73 278.9 212 61.8
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 5.5e-72 275.0 154 81.2
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 2.7e-71 272.7 202 64.4
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 5.1e-70 268.5 293 49.8
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 1.5e-69 266.9 179 65.4
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 5.7e-69 265.0 154 77.3
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 7.4e-69 264.6 183 68.9
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 9.7e-69 264.2 184 65.8
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.3e-68 263.8 184 67.4
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 2.8e-68 262.7 237 50.6
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 4.8e-68 261.9 181 66.9
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 8.2e-68 261.2 241 55.2
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 1.4e-67 260.4 191 68.6
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.5e-66 256.9 181 62.4
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 3.4e-66 255.8 159 70.4
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.0e-65 254.2 141 83.0
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 3.8e-65 252.3 234 55.6
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 6.5e-65 251.5 241 54.4
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.7e-63 246.1 259 51.4
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 3.0e-62 242.7 197 57.9
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 9.4e-56 221.1 281 45.2
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 2.1e-55 219.9 191 57.6
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 3.3e-53 212.6 158 63.3
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.3e-52 210.7 213 51.6
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.2e-46 188.7 177 53.1
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 1.2e-45 187.6 179 48.0
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 6.3e-44 181.8 143 60.1
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 5.9e-42 175.3 109 70.6
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 5.0e-41 172.2 95 78.9
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 2.9e-33 146.4 207 39.6
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 8.0e-31 138.3 77 75.3
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 3.1e-30 136.3 74 79.7
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 3.7e-28 129.4 148 43.9
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 8.3e-28 128.3 73 78.1
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 7.0e-27 125.2 79 69.6
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.9e-19 100.5 202 31.7
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 5.4e-19 99.0 178 36.0
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 6.2e-15 85.5 50 74.0
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.8e-13 79.0 155 36.8
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 1.6e-07 60.8 35 74.3


User provided reference genes

Program Settings