Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 1.0e-81 306.6 146 100.0
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 1.9e-80 302.4 146 98.6
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 1.9e-80 302.4 146 98.6
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 1.6e-79 299.3 146 97.9
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 2.8e-79 298.5 146 97.9
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 5.8e-77 290.8 146 96.6
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 1.0e-73 280.0 146 93.8
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 1.8e-70 269.2 145 87.6
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 3.1e-70 268.5 146 89.7
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 8.4e-68 260.4 148 86.5
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 5.1e-65 251.1 142 82.4
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 1.5e-64 249.6 139 83.5
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 2.1e-63 245.7 137 83.9
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 2.8e-63 245.4 140 82.1
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 1.3e-57 226.5 138 75.4
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 1.1e-56 223.4 144 72.2
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 1.1e-56 223.4 135 76.3
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.5e-56 223.0 143 72.7
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 4.3e-56 221.5 142 71.8
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 5.6e-56 221.1 137 75.2
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 7.4e-56 220.7 135 75.6
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 2.1e-55 219.2 138 71.7
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 2.8e-55 218.8 136 73.5
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 3.7e-55 218.4 135 74.1
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 3.7e-55 218.4 135 75.6
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 3.7e-55 218.4 137 75.9
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 3.7e-55 218.4 140 74.3
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 8.1e-55 217.2 138 71.7
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.4e-54 216.5 144 69.4
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.4e-54 216.5 138 71.7
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 2.4e-54 215.7 139 74.1
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 4.0e-54 214.9 135 74.1
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 6.9e-54 214.2 142 70.4
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 1.2e-53 213.4 133 74.4
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.2e-53 213.4 136 74.3
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-53 213.0 137 69.3
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 2.0e-53 212.6 137 69.3
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.0e-53 212.6 137 69.3
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 3.4e-53 211.8 139 72.7
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 5.8e-53 211.1 132 74.2
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 5.8e-53 211.1 135 68.9
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.7e-52 209.5 137 68.6
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 4.9e-52 208.0 137 70.1
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 4.9e-52 208.0 143 69.9
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 6.4e-52 207.6 140 68.6
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.4e-51 206.5 138 71.0
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 1.9e-51 206.1 137 71.5
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.9e-51 206.1 137 71.5
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 3.2e-51 205.3 145 69.7
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 3.2e-51 205.3 145 69.0
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.5e-51 204.5 172 59.3
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 5.5e-51 204.5 142 66.2
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 7.1e-51 204.1 138 69.6
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.6e-50 203.0 137 68.6
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.6e-50 203.0 138 68.8
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.1e-50 202.6 138 69.6
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 2.1e-50 202.6 138 69.6
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 2.1e-50 202.6 135 66.7
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.7e-50 202.2 140 68.6
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.7e-50 202.2 140 68.6
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 1.0e-49 200.3 139 66.9
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.0e-49 200.3 133 67.7
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 1.3e-49 199.9 140 70.7
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.8e-49 199.5 135 70.4
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 2.3e-49 199.1 151 64.9
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 2.3e-49 199.1 139 69.1
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 3.0e-49 198.7 144 67.4
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 3.0e-49 198.7 135 67.4
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 6.7e-49 197.6 135 68.9
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 8.7e-49 197.2 135 68.9
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 1.1e-48 196.8 139 70.5
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 1.9e-48 196.1 146 65.1
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 3.3e-48 195.3 142 64.1
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.3e-48 195.3 142 64.1
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 3.3e-48 195.3 134 66.4
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 3.3e-48 195.3 134 66.4
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 3.3e-48 195.3 134 66.4
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 9.6e-48 193.7 134 65.7
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.3e-47 193.4 135 68.9
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.6e-47 193.0 142 62.7
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 2.8e-47 192.2 135 66.7
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 8.2e-47 190.7 139 65.5
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.1e-46 190.3 136 62.5
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.1e-46 190.3 136 62.5
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.1e-46 190.3 136 62.5
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.1e-46 190.3 148 63.5
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.1e-46 190.3 147 62.6
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.8e-46 189.5 136 61.8
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 2.4e-46 189.1 143 60.8
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.4e-46 189.1 143 60.8
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 3.1e-46 188.7 139 66.9
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 4.0e-46 188.3 138 65.2
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 4.0e-46 188.3 138 65.2
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 4.0e-46 188.3 136 61.0
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 6.9e-46 187.6 128 68.0
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 6.9e-46 187.6 138 65.9
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 9.0e-46 187.2 143 58.7
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.2e-45 186.8 137 60.6
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.2e-45 186.8 135 65.2
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.2e-45 186.8 135 67.4
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.5e-45 186.4 136 60.3
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 2.6e-45 185.7 135 64.4
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 4.5e-45 184.9 129 65.1
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.5e-45 184.9 137 61.3
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 5.8e-45 184.5 156 62.8
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.6e-45 184.1 144 61.1
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.3e-44 183.3 145 61.4
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 1.7e-44 183.0 135 65.9
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.2e-44 182.6 137 62.8
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.2e-44 182.6 145 61.4
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 2.9e-44 182.2 143 59.4
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 4.9e-44 181.4 130 64.6
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 8.4e-44 180.6 138 57.2
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 8.4e-44 180.6 135 62.2
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 1.9e-43 179.5 145 60.7
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 3.2e-43 178.7 136 60.3
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 3.2e-43 178.7 136 60.3
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 5.5e-43 177.9 145 57.9
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.5e-43 177.9 140 57.9
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 9.3e-43 177.2 144 63.2
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 1.2e-42 176.8 140 57.9
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.2e-42 176.8 135 60.7
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 1.6e-42 176.4 137 57.7
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 4.6e-42 174.9 129 58.9
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 1.5e-40 169.9 136 61.0
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.9e-40 169.5 136 58.1
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-40 169.5 147 57.8
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.9e-40 169.5 137 59.9
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 2.5e-40 169.1 136 61.8
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 7.4e-40 167.5 136 58.1
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 2.8e-39 165.6 142 57.0
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 3.7e-39 165.2 135 60.0
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 8.2e-39 164.1 145 57.2
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 3.1e-38 162.2 97 72.2
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 5.3e-38 161.4 137 52.6
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.3e-38 161.4 209 43.5
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.2e-37 160.2 136 58.1
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 2.6e-37 159.1 145 55.9
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 2.6e-37 159.1 143 53.8
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 5.9e-37 157.9 135 59.3
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 2.9e-36 155.6 135 50.4
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 6.5e-36 154.5 134 59.7
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 8.5e-36 154.1 140 53.6
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 1.1e-35 153.7 115 66.1
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.0e-33 147.1 113 64.6
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 5.1e-33 144.8 133 51.1
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.5e-32 143.3 143 48.3
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 4.8e-31 138.3 143 49.0
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 3.1e-30 135.6 134 49.3
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.1e-30 135.2 135 52.6
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.6e-29 132.5 95 58.9
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 1.1e-27 127.1 135 48.1
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 2.1e-26 122.9 125 52.0
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 9.1e-22 107.5 131 45.0
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 1.0e-20 104.0 127 44.9
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.9e-20 102.4 105 50.5
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 8.5e-20 100.9 72 55.6
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 2.1e-18 96.3 71 63.4
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.7e-18 95.9 117 41.0
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 2.0e-16 89.7 50 66.0
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 2.6e-16 89.4 51 68.6
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 7.4e-16 87.8 74 67.6
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 8.2e-15 84.3 64 60.9
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.8e-14 83.2 91 51.6
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 5.3e-14 81.6 99 44.4
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 7.0e-14 81.3 64 65.6
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 1.3e-12 77.0 67 58.2
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 2.3e-09 66.2 65 50.8
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 6.7e-09 64.7 39 61.5
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 1.3e-07 60.5 46 63.0


User provided reference genes

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