Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 2.9e-97 358.6 188 100.0
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 1.5e-93 346.3 182 99.5
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 1.2e-87 326.6 191 91.6
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 4.7e-87 324.7 191 91.1
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 1.6e-82 309.7 183 90.7
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 3.5e-66 255.4 172 80.2
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.2e-60 236.1 198 72.2
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 3.3e-56 222.2 192 69.3
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 2.3e-54 216.1 192 69.8
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 4.0e-54 215.3 194 69.1
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 7.5e-53 211.1 203 64.0
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 8.3e-52 207.6 190 65.8
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 1.8e-51 206.5 189 68.3
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 1.6e-50 203.4 177 66.1
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 2.0e-50 203.0 171 67.3
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 2.0e-50 203.0 182 67.6
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 5.8e-45 184.9 204 59.3
Carub.0008s1748 Capsella rubella HOM05D003238 ORTHO05D003571 1.3e-44 183.7 196 57.7
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 4.9e-44 181.8 171 62.6
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 4.1e-43 178.7 182 62.6
BcaNung05246 Brassica carinata HOM05D003238 ORTHO05D003571 2.7e-42 176.0 171 61.4
BcaC01g06458 Brassica carinata HOM05D003238 ORTHO05D003571 7.8e-42 174.5 190 57.9
C03p15230 Brassica napus HOM05D003238 ORTHO05D003571 1.0e-41 174.1 177 59.9
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 5.0e-41 171.8 189 57.1
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.3e-36 157.1 197 54.3
AT5G57000 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 2.5e-32 142.9 194 51.5
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.0e-21 106.7 184 42.9
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 4.2e-19 99.0 194 38.1
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 5.6e-16 88.6 147 43.5
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 1.6e-15 87.0 181 38.7
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 2.1e-15 86.7 165 41.2
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 3.6e-15 85.9 187 39.0
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 1.4e-14 84.0 144 41.0
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 1.4e-14 84.0 260 33.5
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.4e-14 83.2 199 36.2
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.4e-14 83.2 199 36.2
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 3.1e-14 82.8 142 40.8
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.0e-14 82.4 205 34.1
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 5.3e-14 82.0 143 37.8
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 9.0e-14 81.3 205 34.6
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.2e-13 80.9 148 40.5
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 1.5e-13 80.5 123 45.5
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 2.0e-13 80.1 146 43.2
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 2.0e-13 80.1 144 41.7
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 4.5e-13 79.0 146 37.7
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 5.8e-13 78.6 217 31.8
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 7.6e-13 78.2 146 39.0
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.6e-13 78.2 205 34.1
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.3e-12 77.4 223 34.1
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 2.2e-12 76.6 218 34.9
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 4.9e-12 75.5 164 37.8
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.4e-11 73.2 218 31.7
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 2.4e-11 73.2 182 36.3
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 5.4e-11 72.0 161 39.8
Aa31LG3G12880 Aethionema arabicum HOM05D003238 ORTHO05D003571 2.1e-10 70.1 51 72.5
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 2.1e-10 70.1 143 40.6
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 6.0e-10 68.6 145 37.9
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 1.0e-09 67.8 74 56.8
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 1.3e-09 67.4 143 37.8
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 3.9e-09 65.9 196 34.7
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 3.9e-09 65.9 124 40.3
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.9e-09 65.9 124 40.3
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 3.9e-09 65.9 180 32.2
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 8.7e-09 64.7 152 35.5
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 1.1e-08 64.3 122 36.9
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 1.9e-08 63.5 178 36.0
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 1.9e-08 63.5 70 54.3
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 2.5e-08 63.2 63 55.6
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 3.3e-08 62.8 152 32.9
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 3.3e-08 62.8 186 28.0
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 3.3e-08 62.8 68 57.4
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 5.6e-08 62.0 145 37.2
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 7.4e-08 61.6 225 27.1
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 9.6e-08 61.2 74 47.3
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.3e-07 60.8 149 37.6
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.6e-07 60.5 64 51.6
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.6e-07 60.5 43 69.8
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 2.8e-07 59.7 151 40.4
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 2.8e-07 59.7 114 45.6
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 6.2e-07 58.5 165 32.1
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 6.2e-07 58.5 97 42.3
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 6.2e-07 58.5 125 34.4
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 1.1e-06 57.8 61 55.7
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 1.1e-06 57.8 74 44.6
Sc18g0002230 Simmondsia chinensis HOM05D003238 ORTHO05D003571 1.1e-06 57.8 113 32.7
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 1.4e-06 57.4 67 50.7
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 1.8e-06 57.0 77 51.9
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.8e-06 57.0 77 51.9
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.8e-06 57.0 77 51.9
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 1.8e-06 57.0 151 34.4
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.8e-06 57.0 59 55.9
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 1.8e-06 57.0 141 36.9
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.0e-06 55.8 77 50.6
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 5.3e-06 55.5 83 41.0
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 5.3e-06 55.5 153 31.4


User provided reference genes

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