Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA02t05396Z Brassica rapa HOM05D000171 ORTHO05D000101 1.2e-68 263.1 141 100.0
A02p04340 Brassica napus HOM05D000171 ORTHO05D000101 3.8e-65 251.5 141 93.6
BcaC03g15049 Brassica carinata HOM05D000171 ORTHO05D000101 6.4e-65 250.8 142 95.8
BolC2t08669H Brassica oleracea HOM05D000171 ORTHO05D000101 6.4e-65 250.8 142 95.8
A07p32590 Brassica napus HOM05D000171 ORTHO05D000101 1.6e-47 193.0 140 76.4
BraA07t30883Z Brassica rapa HOM05D000171 ORTHO05D000101 1.6e-47 193.0 140 76.4
C02p09190 Brassica napus HOM05D000171 ORTHO05D000101 4.8e-44 181.4 140 74.3
BcaB03g15349 Brassica carinata HOM05D000171 ORTHO05D027461 4.0e-43 178.3 142 72.5
A02p04320 Brassica napus HOM05D000171 ORTHO05D000101 1.8e-38 162.9 139 69.1
CARHR058080 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.0e-38 162.2 140 68.6
BcaC03g15048 Brassica carinata HOM05D000171 ORTHO05D000101 9.6e-37 157.1 137 66.4
BolC2t08668H Brassica oleracea HOM05D000171 ORTHO05D000101 9.6e-37 157.1 137 66.4
C02p25910 Brassica napus HOM05D000171 ORTHO05D000101 1.6e-36 156.4 137 66.4
BcaC03g13528 Brassica carinata HOM05D000171 ORTHO05D000101 3.1e-35 152.1 137 65.0
C02p09150 Brassica napus HOM05D000171 ORTHO05D000101 3.1e-35 152.1 137 65.0
BolC2t06827H Brassica oleracea HOM05D000171 ORTHO05D000101 5.3e-35 151.4 137 65.0
BraA02t05395Z Brassica rapa HOM05D000171 ORTHO05D000101 4.5e-34 148.3 137 64.2
A02p04330 Brassica napus HOM05D000171 ORTHO05D000101 1.3e-33 146.7 137 63.5
BraA02t05394Z Brassica rapa HOM05D000171 ORTHO05D000101 2.1e-31 139.4 139 58.3
C05p60000 Brassica napus HOM05D003760 ORTHO05D004672 2.7e-31 139.0 119 68.1
BolC5t34655H Brassica oleracea HOM05D003760 ORTHO05D004672 2.7e-31 139.0 119 68.1
BraA02t05393Z Brassica rapa HOM05D000171 ORTHO05D000101 6.1e-31 137.9 131 63.4
BraA05t22819Z Brassica rapa HOM05D003760 ORTHO05D004672 1.1e-29 133.7 119 66.4
A05p40900 Brassica napus HOM05D003760 ORTHO05D004672 1.5e-29 133.3 119 66.4
BcaC03g15046 Brassica carinata HOM05D000171 ORTHO05D000101 5.0e-25 118.2 91 72.5
BraA02t05398Z Brassica rapa HOM05D000171 ORTHO05D000101 6.7e-22 107.8 76 77.6
Thhalv10019453m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.8e-20 101.7 138 47.1
Thhalv10023891m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 6.3e-20 101.3 132 51.5
A02p04310 Brassica napus HOM05D000171 ORTHO05D000101 1.2e-18 97.1 104 58.7
C02p07900 Brassica napus HOM05D000171 ORTHO05D000101 2.5e-16 89.4 145 40.0
Thhalv10015249m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.2e-16 89.0 148 41.2
BcaNung02196 Brassica carinata HOM05D000171 ORTHO05D000101 5.5e-16 88.2 143 42.7
BolC2t06714H Brassica oleracea HOM05D000171 ORTHO05D000101 1.6e-15 86.7 145 39.3
AT4G11590 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 3.9e-14 82.0 142 40.8
Aa31LG11G13910 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.1e-13 80.5 137 38.7
BolC9t58983H Brassica oleracea HOM05D000171 ORTHO05D000101 1.1e-13 80.5 133 40.6
Carub.0006s3067 Capsella rubella HOM05D000171 ORTHO05D000101 2.0e-13 79.7 129 42.6
BcaC04g18943 Brassica carinata HOM05D000171 ORTHO05D000101 5.7e-13 78.2 131 38.2
C09p61450 Brassica napus HOM05D000171 ORTHO05D000101 5.7e-13 78.2 131 38.2
BcaB08g36896 Brassica carinata HOM05D000171 ORTHO05D000101 9.7e-13 77.4 134 43.3
Aa31LG4G12440 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.7e-12 76.6 135 37.8
BcaB08g36892 Brassica carinata HOM05D000171 ORTHO05D000101 1.7e-12 76.6 133 42.1
Sp6g28450 Schrenkiella parvula HOM05D000171 ORTHO05D000101 1.7e-12 76.6 132 40.2
BcaC03g18442 Brassica carinata HOM05D000171 ORTHO05D000101 2.2e-12 76.3 145 38.6
Aa31LG11G10080 Aethionema arabicum HOM05D000171 ORTHO05D000101 2.8e-12 75.9 140 40.0
Aa31LG4G9200 Aethionema arabicum HOM05D000171 ORTHO05D000101 2.8e-12 75.9 140 40.7
C09p18760 Brassica napus HOM05D000171 ORTHO05D000101 3.7e-12 75.5 134 38.8
C09p61420 Brassica napus HOM05D000171 ORTHO05D000101 3.7e-12 75.5 134 42.5
CARHR197660 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.7e-12 75.5 141 41.8
AL6G26510 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.8e-12 75.1 135 40.0
AL6G25720 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.2e-12 74.3 149 41.6
BolC9t58985H Brassica oleracea HOM05D000171 ORTHO05D000101 1.1e-11 73.9 134 41.0
BcaC04g18942 Brassica carinata HOM05D000171 ORTHO05D000101 7.0e-11 71.2 131 42.0
Aa31LG3G8000 Aethionema arabicum HOM05D000171 ORTHO05D000101 9.1e-11 70.9 139 38.1
Aa31LG4G12430 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.6e-10 70.1 134 35.8
A10p23320 Brassica napus HOM05D000171 ORTHO05D000101 1.6e-10 70.1 131 42.0
BraA10t44400Z Brassica rapa HOM05D000171 ORTHO05D000101 1.6e-10 70.1 131 42.0
BcaB08g36894 Brassica carinata HOM05D000171 ORTHO05D000101 2.0e-10 69.7 128 36.7
Aa31LG10G4440 Aethionema arabicum HOM05D000044 ORTHO05D004555 1.0e-09 67.4 143 32.2
Aa31LG4G12400 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.3e-09 67.0 131 34.4
C02p25890 Brassica napus HOM05D000171 ORTHO05D021829 2.2e-09 66.2 40 85.0
Aa31LG11G10090 Aethionema arabicum HOM05D000171 ORTHO05D000101 2.9e-09 65.9 141 34.8
Aa31LG11G13930 Aethionema arabicum HOM05D000171 ORTHO05D000101 2.9e-09 65.9 132 34.8
Aa31LG10G4070 Aethionema arabicum HOM05D000171 ORTHO05D000101 5.0e-09 65.1 136 35.3
Aa31LG4G12370 Aethionema arabicum HOM05D000171 ORTHO05D000101 5.0e-09 65.1 134 36.6
Aa31LG4G12460 Aethionema arabicum HOM05D000171 ORTHO05D000101 5.0e-09 65.1 135 37.0
Aa31LG4G12360 Aethionema arabicum HOM05D000171 ORTHO05D000101 6.5e-09 64.7 139 34.5
AL1G39220 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.5e-09 64.7 138 35.5
AL1G39230 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.5e-08 63.5 138 34.1
AL1G44890 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.9e-08 63.2 136 35.3
AL1G44920 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.2e-08 62.4 142 37.3
Carub.0001s3227 Capsella rubella HOM05D000171 ORTHO05D000101 4.2e-08 62.0 143 37.1
AL6G33830 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 5.5e-08 61.6 129 35.7
AT1G26515 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 5.5e-08 61.6 140 40.0
AT5G15660 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 9.4e-08 60.8 137 34.3
BcaC02g07817 Brassica carinata HOM05D000171 ORTHO05D000101 9.4e-08 60.8 67 49.3
Aa31LG11G13920 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.2e-07 60.5 134 34.3
Carub.0001s3323 Capsella rubella HOM05D000171 ORTHO05D000101 1.2e-07 60.5 67 49.3
AT1G26510 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.1e-07 59.7 139 35.3
Aa31LG11G10110 Aethionema arabicum HOM05D000171 ORTHO05D000101 2.7e-07 59.3 141 34.0
AL1G46630 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.7e-07 59.3 79 50.6
Aa31LG10G13290 Aethionema arabicum HOM05D000171 ORTHO05D000101 3.6e-07 58.9 136 36.8
AL8G27960 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.6e-07 58.9 132 33.3
AT1G31000 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 3.6e-07 58.9 84 42.9
A03p08400 Brassica napus HOM05D000171 ORTHO05D000101 4.7e-07 58.5 133 36.1
BraA03t10160Z Brassica rapa HOM05D000171 ORTHO05D000101 4.7e-07 58.5 133 36.1
Carub.0006s0263 Capsella rubella HOM05D000171 ORTHO05D000101 6.1e-07 58.2 64 48.4
CARHR258400 Cardamine hirsuta HOM05D000171 ORTHO05D000101 6.1e-07 58.2 115 40.9
AL1G44470 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.0e-07 57.8 45 57.8
AT1G30790 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 8.0e-07 57.8 136 32.4
BraA09t37191Z Brassica rapa HOM05D000171 ORTHO05D000101 8.0e-07 57.8 80 43.8
AT1G47800 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.0e-06 57.4 67 47.8
AT1G47810 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.4e-06 57.0 61 45.9
C04p46150 Brassica napus HOM05D000171 ORTHO05D000101 1.4e-06 57.0 78 46.2
BolC3t13684H Brassica oleracea HOM05D000171 ORTHO05D000101 1.4e-06 57.0 129 33.3
Carub.0008s2334 Capsella rubella HOM05D000171 ORTHO05D000101 1.4e-06 57.0 78 43.6
Aa31LG11G13900 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.8e-06 56.6 94 43.6
AT3G47150 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.8e-06 56.6 60 53.3
BcaB01g04749 Brassica carinata HOM05D000171 ORTHO05D000101 1.8e-06 56.6 129 33.3
BcaC01g06612 Brassica carinata HOM05D000171 ORTHO05D000101 1.8e-06 56.6 129 33.3
A03p10530 Brassica napus HOM05D000171 ORTHO05D000101 1.8e-06 56.6 131 35.1
C03p09770 Brassica napus HOM05D000171 ORTHO05D000101 1.8e-06 56.6 136 31.6
BolC3t13466H Brassica oleracea HOM05D000171 ORTHO05D000101 1.8e-06 56.6 136 31.6
CARHR108840 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.8e-06 56.6 126 34.9
THA.LOC104800494 Tarenaya hassleriana HOM05D000171 ORTHO05D000101 1.8e-06 56.6 133 37.6
Aa31LG11G14020 Aethionema arabicum HOM05D000171 ORTHO05D000101 2.3e-06 56.2 67 46.3
AT1G32420 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.3e-06 56.2 74 47.3
BolC9t54776H Brassica oleracea HOM05D000171 ORTHO05D000101 2.3e-06 56.2 71 45.1
Carub.0001s3806 Capsella rubella HOM05D000171 ORTHO05D000101 2.3e-06 56.2 130 33.1
Carub.0001s4019 Capsella rubella HOM05D000171 ORTHO05D000101 2.3e-06 56.2 130 36.9
Aa31LG6G7120 Aethionema arabicum HOM05D000171 ORTHO05D000101 3.0e-06 55.8 129 38.8
Aa31sc2656G10 Aethionema arabicum HOM05D000171 ORTHO05D000101 3.0e-06 55.8 135 33.3
AL6G33850 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.0e-06 55.8 80 42.5
BcaB01g03501 Brassica carinata HOM05D000171 ORTHO05D000101 3.0e-06 55.8 140 32.9
BcaC04g23380 Brassica carinata HOM05D000171 ORTHO05D000101 3.0e-06 55.8 56 55.4
BcaC04g23384 Brassica carinata HOM05D000171 ORTHO05D000101 3.0e-06 55.8 56 55.4
BcaNung06398 Brassica carinata HOM05D000171 ORTHO05D000101 3.0e-06 55.8 56 55.4
BcaNung06828 Brassica carinata HOM05D000171 ORTHO05D000101 3.0e-06 55.8 61 42.6
C09p08930 Brassica napus HOM05D000171 ORTHO05D000101 3.0e-06 55.8 56 55.4
C09p08970 Brassica napus HOM05D000171 ORTHO05D000101 3.0e-06 55.8 56 55.4
BolC9t53806H Brassica oleracea HOM05D000171 ORTHO05D000101 3.0e-06 55.8 56 55.4
BolC9t53809H Brassica oleracea HOM05D000171 ORTHO05D000101 3.0e-06 55.8 56 55.4
Carub.0001s2863 Capsella rubella HOM05D000171 ORTHO05D000101 3.0e-06 55.8 134 33.6
CARHR190800 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.0e-06 55.8 55 52.7
Thhalv10015726m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.0e-06 55.8 73 45.2
HanXRQChr07g0204801 Helianthus annuus HOM05D000007 ORTHO05D000039 3.0e-06 55.8 75 36.0
AL5G37880 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.0e-06 55.5 53 54.7
BcaB01g04693 Brassica carinata HOM05D000171 ORTHO05D000101 4.0e-06 55.5 68 51.5
A04p12430 Brassica napus HOM05D000171 ORTHO05D000101 4.0e-06 55.5 77 49.4
BraA03t10365Z Brassica rapa HOM05D000171 ORTHO05D000101 4.0e-06 55.5 127 35.4
BraA04t16906Z Brassica rapa HOM05D000171 ORTHO05D000101 4.0e-06 55.5 77 49.4
Thhalv10007869m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.0e-06 55.5 84 36.9
Thhalv10009643m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.0e-06 55.5 62 50.0
AT4G21240 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 5.2e-06 55.1 72 43.1
BcaB01g05205 Brassica carinata HOM05D000171 ORTHO05D000101 5.2e-06 55.1 99 36.4
BcaC06g36671 Brassica carinata HOM05D000171 ORTHO05D000101 5.2e-06 55.1 131 32.1
A03p08390 Brassica napus HOM05D000171 ORTHO05D000101 5.2e-06 55.1 60 50.0
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 5.2e-06 55.1 125 32.8
C04p46160 Brassica napus HOM05D000171 ORTHO05D000101 5.2e-06 55.1 79 46.8
BolC4t26200H Brassica oleracea HOM05D000171 ORTHO05D000101 5.2e-06 55.1 79 46.8
BolC7t40565H Brassica oleracea HOM05D000171 ORTHO05D000101 5.2e-06 55.1 131 32.1
BraA03t10159Z Brassica rapa HOM05D000171 ORTHO05D000101 5.2e-06 55.1 60 50.0
CARHR177340 Cardamine hirsuta HOM05D000171 ORTHO05D000101 5.2e-06 55.1 77 46.8
AT5G15670 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 6.7e-06 54.7 58 48.3
A03p10910 Brassica napus HOM05D000171 ORTHO05D000101 6.7e-06 54.7 55 50.9
A07p00660 Brassica napus HOM05D000171 ORTHO05D000101 6.7e-06 54.7 75 48.0
A08p25770 Brassica napus HOM05D000367 ORTHO05D002159 6.7e-06 54.7 75 41.3
BraA03t10401Z Brassica rapa HOM05D000171 ORTHO05D000101 6.7e-06 54.7 55 50.9
Carub.0006s1309 Capsella rubella HOM05D000171 ORTHO05D000101 6.7e-06 54.7 81 44.4
CARHR029970 Cardamine hirsuta HOM05D000171 ORTHO05D000101 6.7e-06 54.7 133 31.6
THA.LOC104799108 Tarenaya hassleriana HOM05D000171 ORTHO05D000101 6.7e-06 54.7 129 32.6
AL5G38040 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.8e-06 54.3 49 61.2
BcaB03g16785 Brassica carinata HOM05D000171 ORTHO05D000101 8.8e-06 54.3 81 38.3
BcaC09g51689 Brassica carinata HOM05D000171 ORTHO05D000101 8.8e-06 54.3 129 29.5
BcaNung05190 Brassica carinata HOM05D000171 ORTHO05D000101 8.8e-06 54.3 143 30.8
C07p52590 Brassica napus HOM05D002608 ORTHO05D000101 8.8e-06 54.3 141 32.6
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 8.8e-06 54.3 125 32.0
Carub.0001s3083 Capsella rubella HOM05D000171 ORTHO05D000101 8.8e-06 54.3 74 47.3
CARHR001440 Cardamine hirsuta HOM05D000171 ORTHO05D000101 8.8e-06 54.3 72 44.4
CARHR036630 Cardamine hirsuta HOM05D000171 ORTHO05D000101 8.8e-06 54.3 138 32.6
Sp1g24400 Schrenkiella parvula HOM05D000171 ORTHO05D000101 8.8e-06 54.3 66 45.5
Sp7g03180 Schrenkiella parvula HOM05D000171 ORTHO05D000101 8.8e-06 54.3 80 46.2


User provided reference genes

Program Settings