Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 4.3e-127 458.0 230 100.0
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 4.0e-64 248.8 181 70.7
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 1.7e-62 243.4 180 70.6
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 1.8e-61 240.0 189 68.8
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 4.1e-61 238.8 186 68.8
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 1.6e-60 236.9 179 72.1
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 1.6e-60 236.9 194 67.0
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 6.1e-57 224.9 197 64.5
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 7.3e-50 201.4 177 63.3
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 1.2e-49 200.7 170 65.3
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 3.6e-49 199.1 181 64.6
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 3.1e-48 196.1 179 62.0
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 5.2e-48 195.3 178 63.5
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.2e-47 194.1 188 58.5
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.7e-46 189.1 138 68.1
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 2.4e-45 186.4 186 59.7
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 9.2e-45 184.5 211 56.9
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 5.6e-42 175.3 150 61.3
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 5.6e-42 175.3 150 61.3
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 5.6e-42 175.3 153 60.1
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 9.5e-42 174.5 150 60.7
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 6.2e-41 171.8 150 60.0
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 6.2e-41 171.8 150 60.0
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 6.2e-41 171.8 150 60.0
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 1.4e-40 170.6 153 60.1
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 4.0e-40 169.1 158 58.2
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.4e-39 166.0 168 57.7
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 5.8e-39 165.2 153 57.5
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 7.5e-39 164.9 153 56.9
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 9.9e-39 164.5 155 58.1
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 1.3e-38 164.1 206 48.1
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.7e-38 163.7 195 50.3
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 6.4e-38 161.8 170 53.5
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 1.4e-37 160.6 147 57.8
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 3.2e-37 159.5 170 52.4
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 5.4e-37 158.7 147 57.8
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 5.4e-37 158.7 147 57.8
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 9.2e-37 157.9 172 54.7
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.6e-36 155.6 153 54.9
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 1.2e-31 141.0 152 50.7
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 3.4e-31 139.4 149 49.0
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.4e-31 139.0 108 65.7
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 7.6e-31 138.3 152 49.3
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 7.6e-31 138.3 199 42.7
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 7.6e-31 138.3 154 49.4
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 1.7e-30 137.1 149 49.0
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 2.2e-30 136.7 158 45.6
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 2.9e-30 136.3 153 48.4
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 4.9e-30 135.6 156 48.1
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 6.4e-30 135.2 155 47.7
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.1e-29 134.4 174 45.4
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.1e-29 134.4 174 45.4
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 1.4e-29 134.0 153 47.1
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.4e-29 134.0 148 48.0
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 1.4e-29 134.0 174 45.4
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.4e-29 134.0 150 46.0
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.4e-29 134.0 150 46.0
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.9e-29 133.7 150 46.0
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 2.4e-29 133.3 158 46.2
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.4e-29 133.3 157 47.1
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 2.4e-29 133.3 201 40.3
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 2.4e-29 133.3 175 46.9
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 2.4e-29 133.3 161 44.1
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 2.4e-29 133.3 150 45.3
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 2.4e-29 133.3 150 45.3
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.4e-29 133.3 150 46.0
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 3.2e-29 132.9 148 47.3
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 3.2e-29 132.9 194 40.7
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 4.2e-29 132.5 205 41.0
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 4.2e-29 132.5 155 46.5
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 5.4e-29 132.1 179 44.1
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 5.4e-29 132.1 154 45.5
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 5.4e-29 132.1 205 40.0
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 7.1e-29 131.7 152 45.4
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 9.2e-29 131.3 150 45.3
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.2e-28 131.0 155 45.8
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 2.1e-28 130.2 150 44.0
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 2.1e-28 130.2 170 45.9
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 2.7e-28 129.8 156 48.1
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 2.7e-28 129.8 152 46.7
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 3.5e-28 129.4 209 41.6
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 3.5e-28 129.4 175 41.7
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 3.5e-28 129.4 195 42.6
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 3.5e-28 129.4 159 46.5
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 4.6e-28 129.0 155 43.9
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 4.6e-28 129.0 159 45.3
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 6.0e-28 128.6 153 45.1
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 6.0e-28 128.6 153 44.4
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 6.0e-28 128.6 161 41.6
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 7.8e-28 128.3 152 46.1
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 7.8e-28 128.3 152 46.1
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 1.0e-27 127.9 206 38.8
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 1.0e-27 127.9 158 43.7
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.0e-27 127.9 207 39.6
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 1.0e-27 127.9 152 46.1
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 1.3e-27 127.5 153 47.1
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.7e-27 127.1 152 46.1
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 1.7e-27 127.1 153 44.4
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 2.3e-27 126.7 155 44.5
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 2.3e-27 126.7 171 43.3
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.3e-27 126.7 199 39.7
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 3.9e-27 125.9 158 43.7
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 3.9e-27 125.9 204 40.2
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 3.9e-27 125.9 164 45.1
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 5.1e-27 125.6 159 41.5
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 5.1e-27 125.6 159 41.5
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 8.7e-27 124.8 153 44.4
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 1.1e-26 124.4 153 45.8
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.1e-26 124.4 159 42.8
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 1.9e-26 123.6 171 44.4
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 1.9e-26 123.6 153 43.8
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 2.5e-26 123.2 155 42.6
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 2.5e-26 123.2 158 42.4
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 2.5e-26 123.2 153 43.8
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 2.5e-26 123.2 153 43.8
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 2.5e-26 123.2 156 43.6
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 3.3e-26 122.9 193 39.9
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 3.3e-26 122.9 198 38.9
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 3.3e-26 122.9 195 38.5
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 4.3e-26 122.5 152 44.1
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 7.3e-26 121.7 154 43.5
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 1.3e-25 120.9 155 42.6
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 2.1e-25 120.2 155 41.9
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 2.1e-25 120.2 153 42.5
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 2.1e-25 120.2 199 38.7
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 2.8e-25 119.8 162 43.8
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 3.6e-25 119.4 152 44.1
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 4.8e-25 119.0 200 38.0
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 3.1e-24 116.3 178 38.8
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 6.9e-24 115.2 156 41.7
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 9.0e-24 114.8 151 43.0
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.2e-23 114.4 87 67.8
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 2.0e-23 113.6 148 42.6
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 2.6e-23 113.2 151 41.7
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 8.4e-22 108.2 146 45.2
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 2.4e-21 106.7 129 42.6
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 7.8e-20 101.7 123 43.1
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 8.7e-19 98.2 123 40.7
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 3.2e-13 79.7 149 34.2
A01p31840 Brassica napus HOM05D004840 ORTHO05D005751 2.1e-12 77.0 115 48.7
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.9e-10 70.5 81 42.0
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 4.5e-07 59.3 82 43.9
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 6.4e-06 55.5 55 49.1


User provided reference genes

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