Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.2e-135 486.5 249 100.0
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 2.8e-116 422.2 221 98.2
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 2.8e-116 422.2 221 98.2
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 9.5e-112 407.1 221 95.5
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 2.8e-103 379.0 221 91.9
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.8e-98 360.9 221 85.5
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.8e-98 360.9 221 85.5
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 5.0e-97 358.2 221 85.5
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 5.0e-97 358.2 221 84.6
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 4.3e-96 355.1 223 85.2
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 7.3e-96 354.4 223 84.8
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 9.5e-96 354.0 222 85.6
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.6e-95 353.2 223 84.8
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.6e-95 353.2 223 84.8
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 4.1e-91 338.6 222 81.1
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 2.8e-87 325.9 222 79.3
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.2e-77 293.9 240 67.5
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.7e-76 290.0 222 70.7
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.2e-74 283.9 222 69.4
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.4e-70 269.6 159 84.9
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.4e-70 269.6 225 62.7
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 3.1e-70 269.2 226 67.3
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 3.4e-69 265.8 166 80.7
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 4.0e-62 242.3 223 59.6
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 5.3e-62 241.9 227 58.1
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 6.9e-62 241.5 223 59.6
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 6.9e-62 241.5 228 57.9
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.5e-61 240.4 223 59.2
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.5e-61 240.4 225 57.8
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 2.6e-61 239.6 233 55.8
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.6e-61 239.6 218 61.5
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.8e-61 238.4 218 61.5
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 7.6e-61 238.0 228 58.3
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.3e-60 237.3 225 58.7
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.8e-60 235.7 187 63.6
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 8.4e-60 234.6 170 68.8
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.4e-59 233.8 225 58.2
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.9e-59 233.4 232 57.8
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.4e-59 233.0 217 58.1
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 2.4e-59 233.0 226 56.2
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 2.4e-59 233.0 166 67.5
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 3.2e-59 232.6 208 57.7
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 3.2e-59 232.6 177 65.5
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 3.2e-59 232.6 223 57.8
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 4.2e-59 232.3 226 57.5
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 5.4e-59 231.9 225 56.9
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 9.3e-59 231.1 222 57.7
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.2e-58 230.7 218 56.0
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.2e-58 230.7 218 59.2
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.2e-58 230.7 225 56.9
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 4.6e-58 228.8 225 56.4
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 4.6e-58 228.8 221 57.0
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 4.6e-58 228.8 223 56.1
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 6.0e-58 228.4 223 55.6
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.0e-58 228.4 182 62.6
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 6.0e-58 228.4 220 55.5
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.0e-57 227.6 228 57.5
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.3e-57 227.3 166 66.9
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.3e-57 227.3 231 53.7
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.8e-57 226.9 221 55.2
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.8e-57 226.9 222 57.2
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 2.3e-57 226.5 202 59.9
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 2.3e-57 226.5 226 56.6
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.9e-57 225.7 219 58.0
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 5.1e-57 225.3 223 54.7
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 6.7e-57 224.9 144 81.2
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 6.7e-57 224.9 221 57.9
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.1e-56 224.2 217 56.2
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.5e-56 223.8 166 63.9
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.5e-56 223.8 206 58.3
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.9e-56 223.4 222 55.4
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.9e-56 223.4 168 64.3
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.3e-56 222.6 219 56.6
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 5.6e-56 221.9 225 55.6
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 7.4e-56 221.5 224 54.5
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 7.4e-56 221.5 224 54.5
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 2.1e-55 219.9 226 55.8
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 2.1e-55 219.9 226 55.8
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 2.8e-55 219.5 166 62.7
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 3.7e-55 219.2 222 58.6
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 6.2e-55 218.4 209 56.5
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 8.1e-55 218.0 221 54.3
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.1e-54 217.6 195 56.4
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.8e-54 216.9 219 55.7
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 3.1e-54 216.1 188 58.0
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.1e-54 216.1 159 66.7
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.0e-54 215.7 209 55.0
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 5.3e-54 215.3 224 55.8
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 5.3e-54 215.3 221 51.6
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 6.9e-54 214.9 173 62.4
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 9.0e-54 214.5 229 52.4
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.2e-53 214.2 159 66.7
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.2e-53 214.2 208 57.2
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 1.5e-53 213.8 222 54.1
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.5e-53 213.8 185 56.2
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.0e-53 213.4 208 54.3
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.6e-53 213.0 159 66.0
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.6e-53 213.0 133 77.4
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 3.4e-53 212.6 235 51.5
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 4.5e-53 212.2 222 54.1
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 4.5e-53 212.2 159 65.4
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.6e-53 211.5 159 65.4
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.9e-52 209.5 221 51.6
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 2.9e-52 209.5 222 50.9
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.8e-52 209.1 185 57.8
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.8e-52 209.1 226 52.2
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 3.8e-52 209.1 228 52.2
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 3.8e-52 209.1 232 53.4
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 4.9e-52 208.8 185 57.3
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.1e-51 207.6 166 64.5
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.4e-51 207.2 227 54.2
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.4e-51 207.2 159 64.2
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.4e-51 207.2 185 56.8
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 2.4e-51 206.5 157 63.7
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 3.2e-51 206.1 233 51.1
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.2e-50 204.1 195 56.4
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.6e-50 203.8 227 53.3
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 2.1e-50 203.4 227 53.3
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 2.1e-50 203.4 224 51.3
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 2.7e-50 203.0 166 58.4
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 2.7e-50 203.0 194 56.2
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 2.7e-50 203.0 156 63.5
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 3.0e-49 199.5 219 50.7
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 5.1e-49 198.7 194 54.6
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 8.7e-49 198.0 226 50.9
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.1e-48 197.6 212 53.8
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 7.4e-48 194.9 144 66.7
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.6e-47 193.7 172 58.7
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.8e-46 190.3 221 49.3
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 2.4e-46 189.9 228 48.7
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 6.9e-46 188.3 220 51.4
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.3e-44 184.1 153 60.1
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.7e-44 183.7 153 60.8
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 2.9e-44 183.0 227 48.5
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 6.5e-44 181.8 168 53.6
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.1e-43 181.0 185 49.7
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-43 180.6 128 68.0
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-42 177.6 153 60.8
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 2.1e-42 176.8 154 58.4
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.8e-41 173.7 128 64.1
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 3.3e-40 169.5 153 55.6
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-33 147.9 122 60.7
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.7e-31 140.6 104 64.4
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 7.7e-29 131.7 164 48.2
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 5.5e-27 125.6 93 62.4
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 5.5e-27 125.6 206 36.9
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 3.7e-23 112.8 154 38.3
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.3e-22 109.0 74 67.6
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 9.1e-22 108.2 160 38.1
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.2e-18 97.8 143 37.8
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 8.0e-18 95.1 133 36.8
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.4e-17 94.4 86 57.0
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 6.3e-15 85.5 71 62.0
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 6.3e-15 85.5 71 62.0
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 4.5e-13 79.3 59 69.5
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 4.5e-13 79.3 74 48.6
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 2.5e-11 73.6 128 33.6
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.7e-10 70.1 102 45.1
Aa31sc213G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 6.1e-10 68.9 56 69.6


User provided reference genes

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