Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 3.4e-65 251.5 126 100.0
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 1.0e-61 240.0 120 99.2
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 1.0e-61 240.0 120 99.2
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 1.0e-61 240.0 120 99.2
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 1.0e-61 240.0 120 99.2
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 1.0e-61 240.0 120 99.2
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 1.0e-61 240.0 120 99.2
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 1.0e-61 240.0 120 99.2
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 7.2e-60 233.8 120 96.7
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 4.7e-59 231.1 120 95.0
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.0e-53 213.4 120 91.7
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 1.0e-45 186.8 118 77.1
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 8.6e-45 183.7 118 77.1
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 2.5e-44 182.2 120 74.2
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 3.3e-44 181.8 122 70.5
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 5.6e-44 181.0 118 75.4
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 9.5e-44 180.3 118 76.3
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.8e-43 178.7 122 72.1
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.8e-43 178.7 122 72.1
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.8e-43 178.7 122 72.1
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.8e-43 178.7 122 72.1
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 3.6e-43 178.3 124 71.8
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 3.6e-43 178.3 118 75.4
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.1e-43 177.2 122 71.3
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-42 176.8 122 71.3
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 1.4e-42 176.4 118 73.7
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.8e-42 176.0 122 70.5
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 2.3e-42 175.6 124 69.4
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 2.3e-42 175.6 124 69.4
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 4.0e-42 174.9 120 70.8
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 4.0e-42 174.9 120 70.8
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 6.8e-42 174.1 120 71.7
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 1.2e-41 173.3 124 67.7
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.5e-41 172.9 120 71.7
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 2.0e-41 172.6 118 71.2
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 2.0e-41 172.6 120 71.7
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 4.4e-41 171.4 118 69.5
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 4.4e-41 171.4 119 72.3
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 4.4e-41 171.4 117 74.4
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 4.4e-41 171.4 120 71.7
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 4.4e-41 171.4 120 71.7
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 4.4e-41 171.4 120 71.7
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 4.4e-41 171.4 120 71.7
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 4.4e-41 171.4 120 71.7
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 4.4e-41 171.4 120 71.7
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 2.9e-40 168.7 120 70.0
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 2.9e-40 168.7 120 70.0
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 2.9e-40 168.7 119 72.3
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 2.9e-40 168.7 119 72.3
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 3.7e-40 168.3 122 68.0
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 6.4e-40 167.5 106 78.3
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 4.6e-38 161.4 81 96.3
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 4.6e-38 161.4 111 69.4
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 2.3e-37 159.1 124 62.9
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 1.9e-36 156.0 117 66.7
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.2e-35 153.3 122 65.6
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.1e-35 152.5 122 63.9
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 1.4e-34 149.8 114 66.7
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 2.3e-34 149.1 114 67.5
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 4.0e-34 148.3 105 68.6
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.2e-33 146.7 103 71.8
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 1.3e-32 143.3 124 61.3
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.7e-32 142.9 118 64.4
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.2e-32 142.5 114 64.0
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 2.2e-32 142.5 125 61.6
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 7.1e-31 137.5 118 61.9
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 3.5e-30 135.2 106 66.0
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 3.5e-30 135.2 106 66.0
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 4.6e-30 134.8 118 58.5
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 3.6e-27 125.2 124 54.0
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 4.7e-27 124.8 119 60.5
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 8.1e-27 124.0 121 60.3
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.1e-26 123.6 120 60.8
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 4.0e-26 121.7 117 58.1
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 1.2e-25 120.2 87 67.8
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 9.9e-25 117.1 85 67.1
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.3e-24 116.7 76 73.7
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.7e-24 116.3 118 57.6
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 6.4e-24 114.4 117 55.6
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.2e-23 111.7 93 63.4
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 5.4e-23 111.3 120 55.8
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 9.3e-23 110.5 125 48.0
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 7.8e-22 107.5 72 69.4
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 1.3e-19 100.1 124 49.2
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-18 97.1 122 49.2
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 3.1e-18 95.5 81 58.0
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 3.4e-17 92.0 73 58.9
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 4.4e-17 91.7 69 63.8
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 7.6e-17 90.9 66 68.2
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 9.9e-17 90.5 72 59.7
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.4e-16 87.4 122 45.1
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 2.4e-15 85.9 42 100.0
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 6.0e-14 81.3 51 68.6
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 1.5e-12 76.6 110 42.7
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 3.3e-12 75.5 49 69.4
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 7.4e-12 74.3 44 84.1
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 7.4e-12 74.3 44 84.1
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.4e-12 74.3 52 71.2
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 3.6e-11 72.0 61 52.5
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-10 70.1 126 39.7
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.2e-09 67.0 43 74.4
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 7.6e-09 64.3 78 48.7
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 4.9e-08 61.6 45 75.6
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 2.4e-07 59.3 58 53.4
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 2.4e-07 59.3 42 76.2
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 3.2e-07 58.9 43 65.1
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 4.2e-07 58.5 46 69.6
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 5.5e-07 58.2 40 75.0
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 7.1e-07 57.8 42 57.1
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 1.6e-06 56.6 43 65.1


User provided reference genes

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