Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 6.9e-51 203.8 109 100.0
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 1.3e-41 172.9 101 93.1
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 1.3e-41 172.9 101 93.1
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 1.3e-41 172.9 101 93.1
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 1.3e-41 172.9 101 93.1
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 1.3e-41 172.9 101 93.1
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 1.3e-41 172.9 101 93.1
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 1.3e-41 172.9 101 93.1
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 1.3e-41 172.9 101 93.1
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 3.8e-41 171.4 101 92.1
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 3.8e-41 171.4 101 92.1
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 3.8e-41 171.4 101 92.1
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 5.0e-41 171.0 104 89.4
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 1.9e-40 169.1 101 92.1
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 1.9e-40 169.1 101 92.1
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 6.1e-39 164.1 101 90.1
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 8.8e-38 160.2 101 88.1
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 9.7e-37 156.8 101 85.1
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 9.7e-37 156.8 101 85.1
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 9.7e-37 156.8 101 85.1
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 1.7e-36 156.0 101 84.2
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 2.8e-36 155.2 101 85.1
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 3.7e-36 154.8 101 83.2
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 6.3e-36 154.1 101 84.2
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 6.3e-36 154.1 101 84.2
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 6.3e-36 154.1 101 84.2
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.4e-35 152.1 101 83.2
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 2.4e-35 152.1 101 84.2
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 4.1e-35 151.4 101 81.2
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 4.1e-35 151.4 101 81.2
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 4.1e-35 151.4 101 81.2
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 4.1e-35 151.4 101 81.2
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 4.1e-35 151.4 101 81.2
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 4.1e-35 151.4 101 81.2
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 4.1e-35 151.4 101 81.2
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 4.1e-35 151.4 101 81.2
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 4.1e-35 151.4 101 81.2
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 4.1e-35 151.4 101 81.2
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 4.1e-35 151.4 101 82.2
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 4.1e-35 151.4 101 82.2
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 4.1e-35 151.4 101 83.2
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 5.3e-35 151.0 101 80.2
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 5.3e-35 151.0 101 80.2
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 5.3e-35 151.0 101 80.2
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 5.3e-35 151.0 101 80.2
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 5.3e-35 151.0 101 80.2
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 5.3e-35 151.0 101 80.2
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 5.3e-35 151.0 101 80.2
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 5.3e-35 151.0 101 80.2
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 5.3e-35 151.0 101 80.2
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 5.3e-35 151.0 101 80.2
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 5.3e-35 151.0 101 80.2
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 5.3e-35 151.0 101 80.2
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 1.2e-34 149.8 101 80.2
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 3.5e-34 148.3 101 81.2
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 4.5e-34 147.9 99 81.8
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 7.7e-34 147.1 101 77.2
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.2e-33 145.6 101 80.2
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 3.2e-32 141.7 101 77.2
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 5.5e-32 141.0 101 78.2
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.1e-31 139.0 101 77.2
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 2.7e-31 138.7 95 78.9
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 2.7e-31 138.7 101 74.3
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 6.8e-30 134.0 91 80.2
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-29 133.3 101 71.3
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 1.5e-29 132.9 108 72.2
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 5.7e-29 131.0 104 73.1
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 5.7e-29 131.0 104 73.1
BNapus_Darmor_BZH_scaffold_287p00190 Brassica napus HOM05D004570 ORTHO05D005494 1.8e-27 125.9 69 100.0
C02p43580 Brassica napus HOM05D004570 ORTHO05D005494 1.8e-27 125.9 69 100.0
BolSC29t60476H Brassica oleracea HOM05D004570 ORTHO05D005494 1.8e-27 125.9 69 100.0
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.7e-26 122.1 82 81.7
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.9e-25 118.6 88 72.7
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 8.6e-25 117.1 88 72.7
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 8.6e-25 117.1 86 77.9
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 1.5e-24 116.3 89 74.2
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 1.5e-24 116.3 89 74.2
Gohir.D01G101982 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.3e-24 115.2 69 91.3
HanXRQChr00c0314g0573531 Helianthus annuus HOM05D004570 ORTHO05D005494 7.2e-24 114.0 69 89.9
HanXRQChr02g0052581 Helianthus annuus HOM05D004570 ORTHO05D005494 7.2e-24 114.0 69 89.9
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 7.2e-24 114.0 120 60.8
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-23 112.1 83 75.9
Gorai.001G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.0e-22 110.2 69 87.0
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.2e-22 107.8 83 73.5
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 8.9e-22 107.1 79 72.2
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 7.5e-21 104.0 76 69.7
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 9.8e-21 103.6 81 76.5
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 9.8e-21 103.6 82 72.0
Eucgr.E01044 Eucalyptus grandis HOM05D004570 ORTHO05D005494 1.3e-20 103.2 69 85.5
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 2.4e-19 99.0 123 52.0
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 4.1e-19 98.2 80 70.0
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 4.1e-19 98.2 80 70.0
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 4.1e-19 98.2 80 70.0
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 9.2e-19 97.1 121 52.1
Lalb_Chr18g0049721 Lupinus albus HOM05D004570 ORTHO05D005494 1.3e-17 93.2 55 89.1
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 1.7e-17 92.8 62 79.0
CSS0008162 Camellia sinensis var. sinensis HOM05D004570 ORTHO05D005494 1.9e-16 89.4 53 90.6
EL10Ac7g17378 Beta vulgaris HOM05D004570 ORTHO05D005494 2.5e-16 89.0 60 78.3
BolC9t53164H Brassica oleracea HOM05D004570 ORTHO05D005494 5.6e-16 87.8 51 86.3
HanXRQChr11g0345201 Helianthus annuus HOM05D004570 ORTHO05D005494 4.7e-15 84.7 59 74.6
Lalb_Chr23g0274801 Lupinus albus HOM05D004570 ORTHO05D005494 4.7e-15 84.7 56 80.4
GSVIVG01023557001 Vitis vinifera HOM05D000092 ORTHO05D000042 8.0e-15 84.0 48 93.8
BraSC58t46492Z Brassica rapa HOM05D004570 ORTHO05D005494 1.0e-14 83.6 45 88.9
CsaV3_7G024620 Cucumis sativus L. HOM05D004570 ORTHO05D005494 3.4e-13 78.6 50 82.0
arahy.Tifrunner.gnm1.ann1.S91IH0 Arachis hypogaea HOM05D004570 ORTHO05D005494 8.3e-12 73.9 55 70.9
Lalb_Chr20g0115501 Lupinus albus HOM05D004570 ORTHO05D005494 8.3e-12 73.9 59 69.5
Gorai.013G170400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.4e-11 73.2 59 69.5
BolC8t52433H Brassica oleracea HOM05D004570 ORTHO05D005494 6.0e-10 67.8 41 82.9
arahy.Tifrunner.gnm1.ann1.RCVY9V Arachis hypogaea HOM05D000540 ORTHO05D000681 2.3e-09 65.9 40 87.5
SMO086G0030 Selaginella moellendorffii HOM05D004570 ORTHO05D005494 2.1e-07 59.3 57 52.6
BolC4t25866H Brassica oleracea HOM05D004570 ORTHO05D005494 6.2e-07 57.8 37 78.4


User provided reference genes

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