Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC49t61171H Brassica oleracea HOM05D000274 ORTHO05D002552 3.8e-48 194.5 97 100.0
BraSC58t46495Z Brassica rapa HOM05D000274 ORTHO05D002552 7.6e-25 117.1 88 72.7
BolSC29t60479H Brassica oleracea HOM05D000274 ORTHO05D002552 1.6e-22 109.4 88 70.5
ATCG00670 Arabidopsis thaliana HOM05D000274 ORTHO05D002552 7.9e-22 107.1 88 68.2
CARHR282180 Cardamine hirsuta HOM05D000274 ORTHO05D002552 2.3e-21 105.5 88 68.2
DCAR_032510 Daucus carota HOM05D000274 ORTHO05D002552 5.1e-21 104.4 88 64.8
PGR111G0023 Punica granatum HOM05D000274 ORTHO05D002552 2.5e-20 102.1 88 62.5
PSO548G0031 Papaver somniferum HOM05D000274 ORTHO05D002552 3.3e-20 101.7 88 61.4
SalBow1G7090 Salvia bowleyana HOM05D000274 ORTHO05D002552 5.6e-20 100.9 88 63.6
Sed0002260 Sechium edule HOM05D000274 ORTHO05D002552 7.4e-20 100.5 88 62.5
Sed0019404 Sechium edule HOM05D000274 ORTHO05D002552 7.4e-20 100.5 88 62.5
Sed0022936 Sechium edule HOM05D000274 ORTHO05D002552 7.4e-20 100.5 88 62.5
Gohir.A12G229201 Gossypium hirsutum HOM05D000274 ORTHO05D002552 9.6e-20 100.1 88 61.4
Gohir.D01G102021 Gossypium hirsutum HOM05D000274 ORTHO05D002552 9.6e-20 100.1 88 61.4
Lalb_Chr07g0192041 Lupinus albus HOM05D000274 ORTHO05D002552 1.3e-19 99.8 88 61.4
LjContig00318g0024179 Lotus japonicus HOM05D000274 ORTHO05D002552 2.1e-19 99.0 88 60.2
Gohir.D12G107600 Gossypium hirsutum HOM05D000274 ORTHO05D002552 6.2e-19 97.4 88 60.2
Gohir.D09G093050 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.4e-18 96.3 88 60.2
Gohir.1Z049602 Gossypium hirsutum HOM05D000274 ORTHO05D002552 3.1e-18 95.1 88 59.1
Phvul.002G090301 Phaseolus vulgaris HOM05D000274 ORTHO05D002552 6.9e-18 94.0 88 56.8
Gohir.A05G285000 Gossypium hirsutum HOM05D000274 ORTHO05D002552 9.0e-18 93.6 88 59.1
Gohir.D12G266650 Gossypium hirsutum HOM05D000274 ORTHO05D002552 3.4e-17 91.7 88 56.8
AL2G21640 Arabidopsis lyrata HOM05D000274 ORTHO05D002552 1.0e-16 90.1 88 61.4
SMO086G0017 Selaginella moellendorffii HOM05D000274 ORTHO05D002552 2.9e-16 88.6 87 55.2
Gohir.D06G104800 Gossypium hirsutum HOM05D000274 ORTHO05D002552 4.9e-16 87.8 88 55.7
Gohir.D06G113800 Gossypium hirsutum HOM05D000274 ORTHO05D002552 8.4e-16 87.0 88 54.5
HanXRQChr00c0314g0573521 Helianthus annuus HOM05D000274 ORTHO05D002552 2.5e-15 85.5 88 55.7
HanXRQChr01g0020281 Helianthus annuus HOM05D000274 ORTHO05D002552 2.5e-15 85.5 88 55.7
HanXRQChr10g0289321 Helianthus annuus HOM05D000274 ORTHO05D002552 2.5e-15 85.5 88 55.7
BNapus_Darmor_BZH_scaffold_287p00220 Brassica napus HOM05D000274 ORTHO05D002552 7.1e-15 84.0 88 58.0
Solyc00g500023.1 Solanum lycopersicum HOM05D000274 ORTHO05D002552 2.1e-14 82.4 88 50.0
C06p23060 Brassica napus HOM05D000274 ORTHO05D002552 3.5e-14 81.6 88 56.8
Zm00001eb039170 Zea mays HOM05D000274 ORTHO05D002552 4.6e-14 81.3 87 48.3
Zm00001eb255900 Zea mays HOM05D000274 ORTHO05D002552 4.6e-14 81.3 87 48.3
Zm00001eb434890 Zea mays HOM05D000274 ORTHO05D002552 4.6e-14 81.3 87 48.3
Zm00001eb435080 Zea mays HOM05D000274 ORTHO05D002552 4.6e-14 81.3 87 48.3
Zm00001eb435150 Zea mays HOM05D000274 ORTHO05D002552 4.6e-14 81.3 87 48.3
Zm00001eb435370 Zea mays HOM05D000274 ORTHO05D002552 4.6e-14 81.3 87 48.3
Zm00001eb437160 Zea mays HOM05D000274 ORTHO05D002552 4.6e-14 81.3 87 48.3
Zm00001eb440350 Zea mays HOM05D000274 ORTHO05D002552 4.6e-14 81.3 87 48.3
C06p22930 Brassica napus HOM05D000274 ORTHO05D002552 6.0e-14 80.9 88 55.7
C09p40540 Brassica napus HOM05D000274 ORTHO05D002552 6.0e-14 80.9 87 57.5
Medtr4g034690 Medicago truncatula HOM05D000274 ORTHO05D002552 7.9e-14 80.5 86 48.8
Sed0002969 Sechium edule HOM05D000274 ORTHO05D002552 7.9e-14 80.5 88 53.4
Medtr0002s0730 Medicago truncatula HOM05D000274 ORTHO05D002552 1.8e-13 79.3 87 47.1
C02p43600 Brassica napus HOM05D000274 ORTHO05D002552 2.3e-13 79.0 88 55.7
EL10Ac1g01444 Beta vulgaris HOM05D000274 ORTHO05D002552 6.7e-13 77.4 92 52.2
Potri.002G178801 Populus trichocarpa HOM05D000274 ORTHO05D002552 8.7e-13 77.0 80 51.2
HanXRQChr16g0529031 Helianthus annuus HOM05D000274 ORTHO05D002552 1.5e-12 76.3 56 66.1
Oeu028774.1 Olea europaea HOM05D000274 ORTHO05D002552 5.7e-12 74.3 74 58.1
BolSC29t60601H Brassica oleracea HOM05D000274 ORTHO05D002552 4.8e-11 71.2 34 100.0
BraSC103t45452Z Brassica rapa HOM05D000274 ORTHO05D002552 4.8e-11 71.2 34 100.0
Nn314s46302 Nelumbo nucifera HOM05D000274 ORTHO05D002552 8.2e-11 70.5 59 64.4
HanXRQChr04g0127541 Helianthus annuus HOM05D000274 ORTHO05D002552 2.4e-10 68.9 74 52.7
Duzib026G0001 Durio zibethinus HOM05D000274 ORTHO05D002552 4.1e-10 68.2 90 42.2
Duzib071G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 4.1e-10 68.2 90 42.2
Duzib086G0003 Durio zibethinus HOM05D000274 ORTHO05D002552 4.1e-10 68.2 90 42.2
Duzib125G0005 Durio zibethinus HOM05D000274 ORTHO05D002552 4.1e-10 68.2 90 42.2
Duzib162G0001 Durio zibethinus HOM05D000274 ORTHO05D002552 4.1e-10 68.2 90 42.2
Duzib185G0005 Durio zibethinus HOM05D000274 ORTHO05D002552 4.1e-10 68.2 90 42.2
Duzib198G0001 Durio zibethinus HOM05D000274 ORTHO05D002552 4.1e-10 68.2 90 42.2
Duzib225G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 4.1e-10 68.2 90 42.2
Duzib233G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 4.1e-10 68.2 90 42.2
Duzib237G0004 Durio zibethinus HOM05D000274 ORTHO05D002552 4.1e-10 68.2 90 42.2
Duzib252G0003 Durio zibethinus HOM05D000274 ORTHO05D002552 4.1e-10 68.2 90 42.2
Duzib253G0005 Durio zibethinus HOM05D000274 ORTHO05D002552 4.1e-10 68.2 90 42.2
Duzib275G0001 Durio zibethinus HOM05D000274 ORTHO05D002552 4.1e-10 68.2 90 42.2
QL93p1043_0012 Quercus lobata HOM05D000274 ORTHO05D002552 1.2e-09 66.6 34 88.2
MD11G1294400 Malus domestica HOM05D000274 ORTHO05D002552 1.5e-09 66.2 88 47.7
BraSC103t45477Z Brassica rapa HOM05D000274 ORTHO05D002552 2.0e-09 65.9 48 68.8
CAN.G1595.8 Capsicum annuum HOM05D000274 ORTHO05D002552 2.6e-09 65.5 34 85.3
CAN.G34.7 Capsicum annuum HOM05D000274 ORTHO05D002552 2.6e-09 65.5 34 85.3
Eucgr.G01320 Eucalyptus grandis HOM05D000274 ORTHO05D002552 5.9e-09 64.3 34 85.3
CAN.G1739.7 Capsicum annuum HOM05D000274 ORTHO05D002552 7.6e-09 63.9 34 85.3
CAN.G129.12 Capsicum annuum HOM05D000274 ORTHO05D002552 1.0e-08 63.5 33 84.8
TAR628G0055 Trochodendron aralioides HOM05D008845 ORTHO05D002552 1.0e-08 63.5 33 87.9
MELO3C027090.2 Cucumis melo HOM05D000274 ORTHO05D002552 1.3e-08 63.2 34 82.4
ECA074G0006 Erigeron canadensis HOM05D000274 ORTHO05D002552 1.3e-08 63.2 74 51.4
Gorai.010G119800 Gossypium raimondii HOM05D000274 ORTHO05D002552 1.3e-08 63.2 41 68.3
CAN.G1478.3 Capsicum annuum HOM05D000274 ORTHO05D002552 1.7e-08 62.8 33 84.8
arahy.Tifrunner.gnm1.ann1.3ZG5BV Arachis hypogaea HOM05D000274 ORTHO05D002552 2.9e-08 62.0 34 79.4
arahy.Tifrunner.gnm1.ann1.IA1WQQ Arachis hypogaea HOM05D000274 ORTHO05D002552 2.9e-08 62.0 34 79.4
Gohir.1Z050580 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.9e-08 62.0 34 79.4
arahy.Tifrunner.gnm1.ann1.JTW10H Arachis hypogaea HOM05D000274 ORTHO05D002552 3.8e-08 61.6 34 76.5
PGSC0003DMG400021571 Solanum tuberosum HOM05D000274 ORTHO05D002552 5.0e-08 61.2 34 76.5
PGSC0003DMG401005300 Solanum tuberosum HOM05D000274 ORTHO05D002552 5.0e-08 61.2 34 76.5
EL10Ac5g13040 Beta vulgaris HOM05D000274 ORTHO05D002552 6.5e-08 60.8 96 43.8
EL10As12g24030 Beta vulgaris HOM05D000274 ORTHO05D002552 6.5e-08 60.8 96 43.8
Gohir.A09G045346 Gossypium hirsutum HOM05D000388 ORTHO05D020804 8.5e-08 60.5 34 76.5
MBI12_g38972_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 8.5e-08 60.5 33 84.8
Psat0s4841g0040 Pisum sativum HOM05D000274 ORTHO05D002552 8.5e-08 60.5 33 78.8
arahy.Tifrunner.gnm1.ann1.3I6E4U Arachis hypogaea HOM05D000274 ORTHO05D002552 1.1e-07 60.1 59 62.7
arahy.Tifrunner.gnm1.ann1.JE9GG4 Arachis hypogaea HOM05D000274 ORTHO05D002552 1.1e-07 60.1 59 62.7
EL10As15g24124 Beta vulgaris HOM05D000274 ORTHO05D002552 1.1e-07 60.1 34 79.4
Zm00001eb439970 Zea mays HOM05D000274 ORTHO05D002552 1.1e-07 60.1 74 44.6
Duzib124G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 1.9e-07 59.3 83 41.0
arahy.Tifrunner.gnm1.ann1.002YPW Arachis hypogaea HOM05D000274 ORTHO05D002552 2.5e-07 58.9 45 66.7
HanXRQChr10g0283621 Helianthus annuus HOM05D000274 ORTHO05D002552 3.2e-07 58.5 88 44.3
HanXRQChr10g0284311 Helianthus annuus HOM05D000274 ORTHO05D002552 3.2e-07 58.5 88 44.3
HanXRQChr10g0318131 Helianthus annuus HOM05D000274 ORTHO05D002552 3.2e-07 58.5 88 44.3
HanXRQChr11g0326901 Helianthus annuus HOM05D000274 ORTHO05D002552 3.2e-07 58.5 88 44.3
HanXRQCPg0580111 Helianthus annuus HOM05D000274 ORTHO05D002552 3.2e-07 58.5 88 44.3
EL10Ac1g01196 Beta vulgaris HOM05D000274 ORTHO05D002552 4.2e-07 58.2 62 54.8
Duzib256G0001 Durio zibethinus HOM05D000274 ORTHO05D002552 4.2e-07 58.2 36 75.0
Gorai.001G099900 Gossypium raimondii HOM05D000274 ORTHO05D002552 4.2e-07 58.2 34 73.5
Gorai.009G282800 Gossypium raimondii HOM05D000274 ORTHO05D002552 4.2e-07 58.2 53 60.4
C02p28700 Brassica napus HOM05D000274 ORTHO05D002552 5.5e-07 57.8 32 90.6
C04p42950 Brassica napus HOM05D000274 ORTHO05D002552 5.5e-07 57.8 32 90.6
BolC4t25865H Brassica oleracea HOM05D000274 ORTHO05D002552 5.5e-07 57.8 32 90.6
BolSC29t60600H Brassica oleracea HOM05D000274 ORTHO05D002552 5.5e-07 57.8 32 90.6
BolSC35t60659H Brassica oleracea HOM05D000274 ORTHO05D002552 5.5e-07 57.8 32 90.6
BolSC46t61010H Brassica oleracea HOM05D000274 ORTHO05D002552 5.5e-07 57.8 32 90.6
BraSC138t45563Z Brassica rapa HOM05D000274 ORTHO05D002552 5.5e-07 57.8 32 90.6
Gorai.010G100700 Gossypium raimondii HOM05D000274 ORTHO05D002552 5.5e-07 57.8 34 73.5
RcHm_v2.0_CPg0501991 Rosa chinensis HOM05D000274 ORTHO05D002552 5.5e-07 57.8 32 81.2
Eucgr.C03014 Eucalyptus grandis HOM05D000274 ORTHO05D002552 7.2e-07 57.4 34 76.5
Psat0s1446g0120 Pisum sativum HOM05D000274 ORTHO05D002552 9.3e-07 57.0 32 78.1
Psat0s7142g0040 Pisum sativum HOM05D000274 ORTHO05D002552 9.3e-07 57.0 32 78.1
Psat7g026920 Pisum sativum HOM05D000274 ORTHO05D002552 9.3e-07 57.0 32 78.1
Psat7g064720 Pisum sativum HOM05D000274 ORTHO05D002552 9.3e-07 57.0 32 78.1
Gohir.D06G018300 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.2e-06 56.6 32 81.2
BcaC03g15273 Brassica carinata HOM05D000274 ORTHO05D002552 2.1e-06 55.8 28 96.4
BcaC07g42433 Brassica carinata HOM05D000274 ORTHO05D002552 2.1e-06 55.8 28 96.4
BraSC103t45453Z Brassica rapa HOM05D000274 ORTHO05D002552 2.1e-06 55.8 28 96.4
BraSC59t46581Z Brassica rapa HOM05D000274 ORTHO05D002552 2.1e-06 55.8 30 93.3
arahy.Tifrunner.gnm1.ann1.H8UXH3 Arachis hypogaea HOM05D000274 ORTHO05D002552 2.7e-06 55.5 31 87.1
Cfa021574 Carpinus fangiana HOM05D000274 ORTHO05D002552 2.7e-06 55.5 29 93.1
Gohir.D09G012400 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.7e-06 55.5 34 70.6
HanXRQChr04g0094301 Helianthus annuus HOM05D000274 ORTHO05D002552 2.7e-06 55.5 88 43.2
Sc02g0004580 Simmondsia chinensis HOM05D000274 ORTHO05D002552 2.7e-06 55.5 29 93.1
Sopen10g008570 Solanum pennellii HOM05D001133 ORTHO05D000941 2.7e-06 55.5 34 70.6
BolC4t25226H Brassica oleracea HOM05D000274 ORTHO05D002552 3.6e-06 55.1 32 84.4
CAN.G219.30 Capsicum annuum HOM05D000274 ORTHO05D002552 3.6e-06 55.1 34 70.6
Eucgr.I00671 Eucalyptus grandis HOM05D000274 ORTHO05D002552 3.6e-06 55.1 31 74.2
HanXRQChr11g0345211 Helianthus annuus HOM05D000274 ORTHO05D002552 3.6e-06 55.1 88 43.2
C04p35750 Brassica napus HOM05D000274 ORTHO05D002552 4.6e-06 54.7 29 89.7
Psat0s1446g0080 Pisum sativum HOM05D000274 ORTHO05D002552 4.6e-06 54.7 32 75.0
Hund01862 Selenicereus undatus HOM05D000274 ORTHO05D002552 4.6e-06 54.7 33 66.7
MELO3C030347.2 Cucumis melo HOM05D000274 ORTHO05D002552 6.1e-06 54.3 34 76.5
Lalb_Chr23g0274361 Lupinus albus HOM05D000274 ORTHO05D002552 6.1e-06 54.3 34 73.5
arahy.Tifrunner.gnm1.ann1.8S8FMR Arachis hypogaea HOM05D000274 ORTHO05D002552 7.9e-06 53.9 28 92.9
arahy.Tifrunner.gnm1.ann1.KX9QRC Arachis hypogaea HOM05D000274 ORTHO05D002552 7.9e-06 53.9 28 92.9
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 7.9e-06 53.9 28 92.9
SalBow6G1627 Salvia bowleyana HOM05D000274 ORTHO05D002552 7.9e-06 53.9 28 92.9
Sc24g0000880 Simmondsia chinensis HOM05D000274 ORTHO05D002552 7.9e-06 53.9 28 92.9


User provided reference genes

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