Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC49t61153H Brassica oleracea HOM05D008016 ORTHO05D010588 1.7e-75 285.8 136 100.0
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 1.4e-72 276.2 136 97.1
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 1.4e-72 276.2 136 97.1
BolSC29t60497H Brassica oleracea HOM05D008016 ORTHO05D010588 2.3e-59 232.3 135 83.7
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 2.3e-59 232.3 135 83.7
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 2.3e-59 232.3 135 83.7
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 2.3e-59 232.3 135 83.7
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 2.3e-59 232.3 135 83.7
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 2.3e-59 232.3 135 83.7
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 2.3e-59 232.3 135 83.7
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 5.6e-50 201.1 135 75.6
BolSC44t60832H Brassica oleracea HOM05D008016 ORTHO05D010588 2.7e-36 155.6 83 92.8
BolSC47t61058H Brassica oleracea HOM05D008016 ORTHO05D010588 3.8e-30 135.2 77 81.8
BolSC44t60813H Brassica oleracea HOM05D008016 ORTHO05D010588 7.4e-26 120.9 81 71.6
vmacro22395 Vaccinium macrocarpon HOM05D008016 ORTHO05D004271 9.7e-26 120.6 167 47.3
C04p22520 Brassica napus HOM05D008016 ORTHO05D004271 3.7e-25 118.6 57 100.0
BolSC29t60625H Brassica oleracea HOM05D008016 ORTHO05D010588 6.9e-24 114.4 76 71.1
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 1.2e-23 113.6 97 64.9
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 1.2e-23 113.6 97 64.9
BcaC05g27379 Brassica carinata HOM05D008016 ORTHO05D021751 4.2e-21 105.1 55 90.9
vmacro22420 Vaccinium macrocarpon HOM05D008016 ORTHO05D010055 1.6e-20 103.2 119 52.9
BraSC58t46467Z Brassica rapa HOM05D008016 ORTHO05D010588 2.1e-20 102.8 48 100.0
arahy.Tifrunner.gnm1.ann1.7D98FQ Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-19 100.1 65 78.5
arahy.Tifrunner.gnm1.ann1.U095GY Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-19 100.1 65 78.5
BolSC29t60538H Brassica oleracea HOM05D008016 ORTHO05D010986 9.7e-18 94.0 62 71.0
Lsat_1_v5_gn_4_68181 Lactuca sativa HOM05D008016 ORTHO05D010055 2.4e-16 89.4 109 49.5
Sopen02g009090 Solanum pennellii HOM05D008037 ORTHO05D004271 1.7e-14 83.2 62 66.1
Gohir.D07G151450 Gossypium hirsutum HOM05D008016 ORTHO05D004271 2.2e-14 82.8 41 90.2
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 2.2e-14 82.8 156 43.6
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 6.5e-14 81.3 80 60.0
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 1.4e-13 80.1 135 45.2
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 5.5e-13 78.2 157 42.0
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 1.6e-12 76.6 156 43.6
arahy.Tifrunner.gnm1.ann1.PRQI1Y Arachis hypogaea HOM05D008016 ORTHO05D010588 2.1e-12 76.3 76 56.6
FAN22G1916 Fragaria x ananassa HOM05D008037 ORTHO05D004271 2.1e-12 76.3 43 90.7
arahy.Tifrunner.gnm1.ann1.V4KXIX Arachis hypogaea HOM05D009726 ORTHO05D010588 3.6e-12 75.5 63 63.5
EL10As10g23964 Beta vulgaris HOM05D001966 ORTHO05D010055 4.7e-12 75.1 89 50.6
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 7.9e-12 74.3 52 73.1
arahy.Tifrunner.gnm1.ann1.54SFA9 Arachis hypogaea HOM05D008037 ORTHO05D004271 1.0e-11 73.9 53 69.8
Oeu040617.1 Olea europaea HOM05D008016 ORTHO05D004271 1.0e-11 73.9 43 88.4
RcHm_v2.0_Chr2g0095251 Rosa chinensis HOM05D008016 ORTHO05D004271 3.9e-11 72.0 40 90.0
Peaxi162Scf00687g00611 Petunia axillaris HOM05D001966 ORTHO05D010055 2.6e-10 69.3 93 45.2
COL.COLO4_33462 Corchorus olitorius HOM05D008016 ORTHO05D004271 3.3e-10 68.9 42 85.7
arahy.Tifrunner.gnm1.ann1.27WM5S Arachis hypogaea HOM05D009726 ORTHO05D010588 4.4e-10 68.6 76 48.7
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-08 63.9 47 72.3
EL10Ac6g14592 Beta vulgaris HOM05D008354 ORTHO05D010055 1.5e-07 60.1 106 42.5
Nitab4.5_0004841g0100 Nicotiana tabacum HOM05D008016 ORTHO05D010055 2.0e-07 59.7 38 76.3
BNapus_Darmor_BZH_scaffold_69p00020 Brassica napus HOM05D008016 ORTHO05D010588 2.6e-07 59.3 47 61.7
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 2.6e-07 59.3 47 61.7
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 2.6e-07 59.3 47 61.7
CARHR282370 Cardamine hirsuta HOM05D008016 ORTHO05D010588 2.6e-07 59.3 47 61.7
MBI08_g48225_MAGBIO Magnolia biondii HOM05D008037 ORTHO05D004271 4.5e-07 58.5 45 68.9
arahy.Tifrunner.gnm1.ann1.WRM2YP Arachis hypogaea HOM05D009726 ORTHO05D010588 1.3e-06 57.0 57 50.9
arahy.Tifrunner.gnm1.ann1.T4T886 Arachis hypogaea HOM05D009726 ORTHO05D010588 2.2e-06 56.2 47 61.7
Nitab4.5_0006502g0020 Nicotiana tabacum HOM05D001966 ORTHO05D010055 3.8e-06 55.5 84 42.9
arahy.Tifrunner.gnm1.ann1.FTZ997 Arachis hypogaea HOM05D000445 ORTHO05D000314 6.5e-06 54.7 24 95.8


User provided reference genes

Program Settings